Evidence map›Paper›PMID 36450262›Full record

ArticleCell reports2022

Spatial transcriptomics demonstrates the role of CD4 T cells in effector CD8 T cell differentiation during chronic viral infection.

Paytsar Topchyan, Ryan Zander, Moujtaba Y Kasmani, Christine Nguyen, Ashley Brown, Siying Lin, Robert Burns, Weiguo Cui

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Elucidating Sex-Specific Immune Profiles in a Breast Cancer Model.International journal of molecular sciences · 2024
    Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Paytsar TopchyanBlood Research Institute, Versiti Wisconsin, 8727 West Watertown Plank Road, Milwaukee, WI 53213, USA; Department of Microbiology and Immunology, Medical College of Wisconsin, 8701 West Watertown Plank Road, Milwaukee, WI 53226, USA.
Ryan ZanderBlood Research Institute, Versiti Wisconsin, 8727 West Watertown Plank Road, Milwaukee, WI 53213, USA.
Moujtaba Y KasmaniBlood Research Institute, Versiti Wisconsin, 8727 West Watertown Plank Road, Milwaukee, WI 53213, USA; Department of Microbiology and Immunology, Medical College of Wisconsin, 8701 West Watertown Plank Road, Milwaukee, WI 53226, USA.
Christine NguyenBlood Research Institute, Versiti Wisconsin, 8727 West Watertown Plank Road, Milwaukee, WI 53213, USA; Department of Microbiology and Immunology, Medical College of Wisconsin, 8701 West Watertown Plank Road, Milwaukee, WI 53226, USA.
Ashley BrownBlood Research Institute, Versiti Wisconsin, 8727 West Watertown Plank Road, Milwaukee, WI 53213, USA; Department of Microbiology and Immunology, Medical College of Wisconsin, 8701 West Watertown Plank Road, Milwaukee, WI 53226, USA.
Siying LinBlood Research Institute, Versiti Wisconsin, 8727 West Watertown Plank Road, Milwaukee, WI 53213, USA; Department of Microbiology and Immunology, Medical College of Wisconsin, 8701 West Watertown Plank Road, Milwaukee, WI 53226, USA.
Robert BurnsBlood Research Institute, Versiti Wisconsin, 8727 West Watertown Plank Road, Milwaukee, WI 53213, USA.
Weiguo CuiBlood Research Institute, Versiti Wisconsin, 8727 West Watertown Plank Road, Milwaukee, WI 53213, USA; Department of Microbiology and Immunology, Medical College of Wisconsin, 8701 West Watertown Plank Road, Milwaukee, WI 53226, USA. Electronic address: weiguo.cui@northwestern.edu.
Medical College of Wisconsin · USVersiti Blood Center of Wisconsin · US

Funding

Medical Scientist Training ProgramT32GM080202 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI BARBIERI, JOSEPH T, SALZMAN, NITA H · 2010 to 2024
$5.7M
Phenotypic, Functional and Transcriptional Heterogeneity in T Cell ExhaustionR01AI148403 · NIAID · VERSITI WISCONSIN, INC. · PI WEIGUO CUI · 2020 to 2026
$3.1M
The Cellular and Transcriptional Control of CD8 T Cell Functional Adaptation to Chronic VirusesR01AI125741 · NIAID · VERSITI WISCONSIN, INC. · PI CUI, WEIGUO · 2016 to 2020
$2.1M
Defining the transcriptional, phenotypic, and functional heterogeneity of virus-specific CD4 T cells during chronic viral infectionR00AI153537 · NIAID · UNIVERSITY OF IOWA · PI ZANDER, RYAN · 2022 to 2023
$498k
Defining the transcriptional, phenotypic, and functional heterogeneity of virus-specific CD4 T cells during chronic viral infectionK99AI153537 · NIAID · VERSITI WISCONSIN, INC. · PI ZANDER, RYAN · 2020 to 2021
$224k
Reprogramming tumor-reactive CD8 T cells by targeting the IL-21-BATF pathway to treat melanomaF30CA246920 · NCI · VERSITI WISCONSIN, INC. · PI TOPCHYAN, PAYTSAR · 2020 to 2023
$200k
Mechanistic study of TCR signaling strength in CD8 T cell differentiation during pathogenesis of T1DMF30DK127526 · NIDDK · MEDICAL COLLEGE OF WISCONSIN · PI KASMANI, MOUJTABA Y · 2020 to 2023
$198k
NCI NIH HHS F30 CA246920NIAID NIH HHS K99 AI153537NIAID NIH HHS R00 AI153537NIAID NIH HHS R01 AI125741NIAID NIH HHS R01 AI148403NIDDK NIH HHS F30 DK127526NIGMS NIH HHS T32 GM080202
6 · The paper itself

Abstract

CD4 T cell help is critical to sustain effector CD8 T cell responses during chronic infection, notably via T follicular helper (Tfh)-derived interleukin-21 (IL-21). Conversely, CD4 depletion results in severe CD8 T cell dysfunction and lifelong viremia despite CD4 T cell reemergence following transient depletion. These observations suggest that repopulating CD4 subsets are functionally or numerically insufficient to orchestrate a robust CD8 response. We utilize spatial transcriptomics and single-cell RNA sequencing (scRNA-seq) to investigate CD4 T cell heterogeneity under CD4-replete and -deplete conditions and explore cellular interactions during chronic infection. Although IL-21-producing Tfh cells repopulate following transient CD4 depletion, they are outnumbered by immunomodulatory CD4 T cells. Moreover, the splenic architecture appears perturbed, with decreases in white pulp regions, coinciding with germinal center losses. These disruptions in splenic architecture are associated with diminished Tfh and progenitor CD8 T cell colocalization, providing a potential mechanism for impaired progenitor-to-effector CD8 T cell differentiation during "un-helped" conditions.

Indexed as

Graft vs Host DiseaseVirus DiseasesCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesCell DifferentiationHumansTranscriptomeCD4 T cellsCD8 T cellsCP: ImmunologyIL-21LCMVsingle-cell RNA sequencingspatial transcriptomicsT follicular helper cells

Identifiers

PMID36450262
PMCPMC9792173
OpenAlexW4310588842

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.