Evidence map›Paper›PMID 36449169›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

Precise and Scarless Insertion of Transposable Elements by Cas9-Mediated Genome Engineering.

Vivien Marie Weber, Aurélien J Doucet, Gael Cristofari

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Vivien Marie WeberUniversité Côte d'Azur, Inserm, CNRS, IRCAN, Nice, France.
Aurélien J DoucetUniversité Côte d'Azur, Inserm, CNRS, IRCAN, Nice, France. Aurelien.Doucet@univ-cotedazur.fr.
Gael CristofariUniversité Côte d'Azur, Inserm, CNRS, IRCAN, Nice, France. Gael.Cristofari@univ-cotedazur.fr.
Inserm · FRUniversité Côte d'Azur · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transposable element insertions can have broad effects on gene expression, ranging from new regulatory functions to pathogenic consequences by transplanting new cis-regulating elements or perturbing existing ones. Genetic manipulation of such DNA sequences can help decipher their mechanism of action. Here, we describe a CRISPR-Cas9-mediated two-step approach to precisely insert transposable elements into into the genome of cultured human cells, without scar or reporter gene. First, a double-selection cassette is inserted into the desired target locus. Once a clone containing a single copy of this cassette has been isolated, a second editing step is performed to exchange the double-selection cassette with a markerless transposable element sequence. More generally, this method can be used for knocking in any large insert without genetic markers.

Indexed as

CRISPR-Cas SystemsDNA Transposable ElementsCell LineCicatrixGenes, ReporterHumansDNA Transposable ElementsCRISPR-Cas9Genome editingHomology-directed repairKnock-inL1LINE-1RetrotransposonThymidine kinaseTransposable element

Identifiers

PMID36449169
OpenAlexW4310477897

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.