Evidence map›Paper›PMID 36448806›Full record

ArticleJournal of virology2022

New Assay Reveals Vast Excess of Defective over Intact HIV-1 Transcripts in Antiretroviral Therapy-Suppressed Individuals.

Holly Anne Martin, Gayatri Nikhila Kadiyala, Sushama Telwatte, Adam Wedrychowski, Tsui-Hua Chen, Sara Moron-Lopez, Doug Arneson, Rebecca Hoh, Steven Deeks, Joseph Wong and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.0field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

  1. Trial
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  11. HIV-1 latency reversal agent boosting is not limited by opioid use.medRxiv : the preprint server for health sciences · 2024
    Article
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  14. Validation of digital droplet PCR assays for cell-associated HIV-1 DNA, HIV-1 2-LTR circle, and HIV-1 unspliced RNA for clinical studies in HIV-1 cure research.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Holly Anne MartinDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, California, USA.
Gayatri Nikhila KadiyalaDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, California, USA.
Sushama TelwatteDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, California, USA.
Adam WedrychowskiDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, California, USA.
Tsui-Hua ChenDepartment of Medicine, San Francisco Veterans Affairs Medical Center, San Francisco, California, USA.
Sara Moron-LopezDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, California, USA.
Doug ArnesonDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, California, USA.
Rebecca HohDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, California, USA.
Steven DeeksDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, California, USA.
Joseph WongDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, California, USA.
Steven A YuklDepartment of Medicine, University of California, San Francisco (UCSF), San Francisco, California, USA.ORCID 0000-0002-4578-9872
San Francisco VA Medical Center · USUniversity of California, San Francisco · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
The heterogeneous HIV expressing reservoir: dynamics, persistence mechanisms, tissue distribution, and contribution to reboundP01AI169606 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Steven A Yukl · 2022 to 2026
$9.3M
Novel single genome approaches to determine the mechanisms of HIV latent infection in blood, gut, and lymph nodesR01DK120387 · NIDDK · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI LICHTERFELD, MATHIAS, YUKL, STEVEN A · 2019 to 2023
$4.1M
Investigating Mechanisms of HIV Persistence in the GutR01DK108349 · NIDDK · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI YUKL, STEVEN A · 2015 to 2019
$2.2M
Understanding HIV latency reversal and clearance of infected cells in vivoR01AI132128 · NIAID · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI WONG, JOSEPH K, YUKL, STEVEN A · 2017 to 2021
$1.9M
NIAID NIH HHS P01 AI169606NIAID NIH HHS P30 AI027763NIAID NIH HHS R01 AI132128NIDDK NIH HHS R01 DK108349NIDDK NIH HHS R01 DK120387
6 · The paper itself

Abstract

Most of the HIV DNA in infected individuals is noninfectious because of deleterious mutations. However, it is unclear how much of the transcribed HIV RNA is potentially infectious or defective. To address this question, we developed and validated a novel intact viral RNA assay (IVRA) that uses droplet digital reverse transcriptase PCR (dd-RT-PCR) for the commonly mutated packaging signal (Psi) and Rev response element (RRE) regions (from the intact proviral DNA assay [IPDA]) to quantify likely intact (Psi

Indexed as

HIV-1HIV InfectionsRNA, ViralVirologyHumansProvirusesRNA, ViraldefectiveHIV-1HIV DNAHIV provirusHIV RNAinfectiousintactintact proviral DNA assay (IPDA)latent infectiontranscriptiontranscriptional regulationviral replication

Identifiers

PMID36448806
PMCPMC9769383
OpenAlexW4310398280

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.