Evidence map›Paper›PMID 36448805›Full record

ArticleJournal of virology2022

Antibody Recognition of CD4-Induced Open HIV-1 Env Trimers.

Zhi Yang, Kim-Marie A Dam, Jonathan M Gershoni, Susan Zolla-Pazner, Pamela J Bjorkman

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
0.5field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 7 citations in OpenAlex.

  1. Pooled it
  2. Pathogen-Mediated Cell Fusion and Actin Cytoskeleton.Advances in experimental medicine and biology · 2026
    Review
  3. Article
  4. Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Zhi Yang *Division of Biology and Biological Engineering, California Institute of Technologygrid.20861.3d, Pasadena, California, USA.ORCID 0000-0001-8680-3784
Kim-Marie A DamDivision of Biology and Biological Engineering, California Institute of Technologygrid.20861.3d, Pasadena, California, USA.ORCID 0000-0002-1416-4757
Jonathan M GershoniShmunis School of Biomedicine and Cancer Research, Tel Aviv Universitygrid.12136.37, Tel Aviv, Israel.
Susan Zolla-PaznerDepartment of Medicine, Division of Infectious Diseases, Icahn School of Medicine at Mount Sinai, New York, New York, USA.ORCID 0000-0002-0750-2666
Pamela J BjorkmanDivision of Biology and Biological Engineering, California Institute of Technologygrid.20861.3d, Pasadena, California, USA.ORCID 0000-0002-2277-3990
California Institute of Technology · USIcahn School of Medicine at Mount Sinai · USTel Aviv University · IL

Funding

CHEETAH Center for the Structural Biology of HIV Infection, Restriction, and Viral DynamicsU54AI170856 · NIAID · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI WALTHER H MOTHES · 2022 to 2026
$34.4M
X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) HIVRAD P01 AI100148 (P.J.B.)HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01AI145655 (S.Z.P.)HHS | NIH | National Institute of General Medical Sciences (NIGMS) P50 AI150464 (P.J.B.)NIAID NIH HHS U54 AI170856NIGMS NIH HHS P41 GM103393
6 · The paper itself

Abstract

Human immunodeficiency virus type 1 (HIV-1) envelope (Env), a heterotrimer of gp120-gp41 subunits, mediates fusion of the viral and host cell membranes after interactions with the host receptor CD4 and a coreceptor. CD4 binding induces rearrangements in Env trimer, resulting in a CD4-induced (CD4i) open Env conformation. Structural studies of antibodies isolated from infected donors have defined antibody-Env interactions, with one class of antibodies specifically recognizing the CD4i open Env conformation. In this study, we characterized a group of monoclonal antibodies isolated from HIV-1 infected donors (V2i MAbs) that displayed characteristics of CD4i antibodies. Binding experiments demonstrated that the V2i MAbs preferentially recognize CD4-bound open Env trimers. Structural characterizations of V2i MAb-Env-CD4 trimer complexes using single-particle cryo-electron microscopy showed recognition by V2i MAbs using different angles of approach to the gp120 V1V2 domain and the β2/β3 strands on a CD4i open conformation Env with no direct interactions of the MAbs with CD4. We also characterized CG10, a CD4i antibody that was raised in mice immunized with a gp120-CD4 complex, bound to an Env trimer plus CD4. CG10 exhibited characteristics similar to those of the V2i antibodies, i.e., recognition of the open Env conformation, but showed direct contacts to both CD4 and gp120. Structural comparisons of these and previously characterized CD4i antibody interactions with Env provide a suggested mechanism for how these antibodies are elicited during HIV-1 infection.

Indexed as

env Gene Products, Human Immunodeficiency VirusHIV-1AnimalsAntibodies, MonoclonalAntibodies, NeutralizingCD4 AntigensCryoelectron MicroscopyHIV AntibodiesHIV Envelope Protein gp120HIV InfectionsHumansMiceProtein BindingProtein ConformationSimian Immunodeficiency VirusAntibodies, MonoclonalAntibodies, NeutralizingCD4 Antigensenv Gene Products, Human Immunodeficiency VirusHIV AntibodiesHIV Envelope Protein gp120CD4i antibodyCG10 antibodyHIV-1 Envmonoclonal antibodiesV2i MAb

Identifiers

PMID36448805
PMCPMC9769388
OpenAlexW4310398579

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.