Evidence map›Paper›PMID 36448222›Full record

ArticlePathogens and global health2023

The suppressor of cytokine signaling-1 (

Tufan Tukek, Sacide Pehlivan, Alpay Medetalibeyoglu, Istemi Serin, Yasemin Oyacı, Huzeyfe Arıcı, Naci Senkal, Mustafa Pehlivan, Ummuhan Isoglu-Alkac, Murat Kose

Open access · greenAbstract read
In one paragraph

Article in Pathogens and global health, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Tufan TukekDepartment of Internal Medicine, Faculty of Medicine, Istanbul University, Istanbul, Turkey.
Sacide PehlivanDepartment of Medical Biology, Faculty of Medicine, Institute of Health Sciences, Istanbul University, Istanbul, Turkey.
Alpay MedetalibeyogluDepartment of Internal Medicine, Faculty of Medicine, Istanbul University, Istanbul, Turkey.
Istemi SerinDepartment of Hematology, Istanbul Training and Research Hospital, University of Health Sciences, Istanbul, Turkey.ORCID 0000-0003-1855-774X
Yasemin OyacıDepartment of Medical Biology, Faculty of Medicine, Institute of Health Sciences, Istanbul University, Istanbul, Turkey.
Huzeyfe ArıcıDepartment of Internal Medicine, Faculty of Medicine, Istanbul University, Istanbul, Turkey.
Naci SenkalDepartment of Internal Medicine, Faculty of Medicine, Istanbul University, Istanbul, Turkey.
Mustafa PehlivanDepartment of Hematology, Faculty of Medicine, Gaziantep University, Gaziantep, Turkey.
Ummuhan Isoglu-AlkacDepartment of Physiology, Faculty of Medicine, Istanbul University, Istanbul, Turkey.
Murat KoseDepartment of Internal Medicine, Faculty of Medicine, Istanbul University, Istanbul, Turkey.
Istanbul University · TRGaziantep University · TRSağlık Bilimleri Üniversitesi · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The suppressor of the cytokine signaling-1 (SOCS1) gene is a short sequence located on chromosome 16 that functions to induce an appropriate immune response and is an essential physiological regulator of interferon (IFN) signaling. In addition to comparing the global DNA and SOCS1 gene promoter methylation status between our patients with coronavirus disease 2019 (COVID-19) and healthy controls, this study demonstrates the effect of the SOCS1 rs33989964 polymorphism on patients with COVID-19. The study group included 139 patients diagnosed with COVID-19 in our hospital's clinics between June and December 2020, and the control group included 78 healthy individuals. After comparing the initial gene polymorphisms of the patients with the healthy control group, three separate clinical subgroups were formed. The gene polymorphism distribution and the methylation status of SOCS1 were examined in these clinical subgroups. Hypomethylation of the SOCS1 gene was observed in the COVID-19 patient group compared to the healthy control group (p = 0.001). Between the patients divided into two separate clinical subgroups, those with severe and mild infections, the Del/Del genotype of the SOCS1 gene was more common in patients with severe infection than in patients with mild infection (p = 0.018). Patients with the CA/CA and CA/Del genotypes were 0.201 times more likely to have a severe infection (95% CI: 0.057-0.716, p = 0.007). Having a non-Del/Del genotype was a protective factor against severe infection. The effect of the SOCS1 rs33989964 polymorphism and methylation status of the SOCS1 gene throughout the COVID-19 pandemic could be significant contributions to the literature.

Indexed as

COVID-19PandemicsCytokinesDNA MethylationHumansPolymorphism, GeneticSuppressor of Cytokine Signaling 1 ProteinSuppressor of Cytokine Signaling ProteinsCytokinesSOCS1 protein, humanSuppressor of Cytokine Signaling 1 ProteinSuppressor of Cytokine Signaling ProteinsCOVID-19methylationmortalitypolymorphismprognosisSOCS1

Identifiers

PMID36448222
PMCPMC10177741
OpenAlexW4310465770

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.