Evidence map›Paper›PMID 36446970›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

Strategies for Monitoring "Ubiquitin C-Terminal Hydrolase 1" (Yuh1) Activity.

Shahaf Saad, Eden Berda, Yuval Klein, Suha Issa, Elah Pick

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Shahaf Saad *The Faculty of Natural Sciences, University of Haifa, Haifa, Israel.
Eden Berda *The Faculty of Natural Sciences, University of Haifa, Haifa, Israel.
Yuval KleinThe Faculty of Natural Sciences, University of Haifa, Haifa, Israel.
Suha IssaThe Faculty of Natural Sciences, University of Haifa, Haifa, Israel.
Elah PickThe Faculty of Natural Sciences, University of Haifa, Haifa, Israel. elahpic@research.haifa.ac.il.
University of Haifa · ILOranim Academic College of Education · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The family of ubiquitin C-terminal hydrolases (UCHs(releases ε-linked amide bonds positioned at the C-terminus of ubiquitin. UCHL3 is a highly conserved and dual functional member of this family, recognizing C-terminal extensions of two paralogous modifiers: ubiquitin and NEDD8. The Saccharomyces cerevisiae orthologue of UCHL3, namely, Yuh1, is the only UCH family member in this organism. Like UCHL3, Yuh1 recognizes ubiquitin as well as Rub1, the direct orthologue of NEDD8 in S. cerevisiae. We describe here a method for examining the activity of bacteria and yeast expressed Yuh1 by monitoring the C-terminal trimming of UBB + 1 and Rub1 + 1 through immunoblotting and the increased AMC fluorescence readout detected through a plate reader.

Indexed as

Saccharomyces cerevisiae ProteinsUbiquitin ThiolesteraseAmidesProteolysisSaccharomyces cerevisiaeUbiquitinUbiquitinsAmidesRUB1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsUbiquitinUbiquitinsUbiquitin ThiolesteraseDeubiquitinaseIn vitro assayNEDD8Rub1Ub-AMCUBB + 1UbiquitinUCHL3Yuh1

Identifiers

PMID36446970
OpenAlexW4310699909

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.