Evidence map›Paper›PMID 36445341›Full record

ArticleVeterinary medicine and science2023

Aspergillus flavus genetic structure at a turkey farm.

Ghaya Cherif, Ines Hadrich, Myriam Harrabi, Aicha Kallel, Nejla Fakhfekh, Mariem Messaoud, Hajer Ben Abdallah, Ons Azeiz, Kalthoum Kallel, Stéphane Ranque

Open access · goldAbstract read
In one paragraph

Article in Veterinary medicine and science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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  3. Aspergillus flavus genetic structure at a turkey farm.Veterinary medicine and science · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Ghaya CherifLaboratory of Parasitology and Mycology UR17SP 03, La Rabta Hospital, Tunis, Tunisia.
Ines HadrichFungi and Parasitic Molecular Biology Laboratory, School of Medicine, University of Sfax, Sfax, Tunisia.
Myriam HarrabiHigher Institute of Nursing Sciences of Tunis, University Tunis El Manar, Tunis, Tunisia.
Aicha KallelLaboratory of Parasitology and Mycology UR17SP 03, La Rabta Hospital, Tunis, Tunisia.
Nejla FakhfekhLaboratory of Parasitology and Mycology UR17SP 03, La Rabta Hospital, Tunis, Tunisia.
Mariem MessaoudLaboratory of Parasitology and Mycology UR17SP 03, La Rabta Hospital, Tunis, Tunisia.
Hajer Ben AbdallahAlfa Group Poultry Company, Chahia, Sfax, Tunisia.
Ons AzeizResearch Platform in Medicine Sciences and Technologies, Faculty of Medicine, Tunis, Tunisia.
Kalthoum KallelLaboratory of Parasitology and Mycology UR17SP 03, La Rabta Hospital, Tunis, Tunisia.
Stéphane RanqueAix-Marseille Université, IRD, AP-HM, SSA, VITROME, Marseille, France.ORCID https://orcid.org/0000-0003-3293-5276
Tunis University · TNAix-Marseille Université · FRUniversity of Sfax · TN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe ubiquitous environmental fungus Aspergillus flavus is also a life-threatening avian pathogen.

objectivesThis study aimed to assess the genetic diversity and population structure of A. flavus isolated from turkey lung biopsy or environmental samples collected in a poultry farm.

methodsA. flavus isolates were identified using both morphological and ITS sequence features. Multilocus microsatellite genotyping was performed by using a panel of six microsatellite markers. Population genetic indices were computed using FSTAT and STRUCTURE. A minimum-spanning tree (MST) and UPGMA dendrogram were drawn using BioNumerics and NTSYS-PC, respectively.

resultsThe 63 environmental (air, surfaces, eggshells and food) A. flavus isolates clustered in 36 genotypes (genotypic diversity = 0.57), and the 19 turkey lung biopsies isolates clustered in 17 genotypes (genotypic diversity = 0.89). The genetic structure of environmental and avian A. flavus populations were clearly differentiated, according to both F-statistics and Bayesian model-based analysis' results. The Bayesian approach indicated gene flow between both A. flavus populations. The MST illustrated the genetic structure of this A. flavus population split in nine clusters, including six singletons.

conclusionsOur results highlight the distinct genetic structure of environmental and avian A. flavus populations, indicative of a genome-based adaptation of isolates involved in avian aspergillosis.

Indexed as

AspergillosisAspergillus flavusAnimalsBayes TheoremBirdsFarmsGenetic StructuresTurkeysaspergillosisAspergillus flavusavian aspergillosisBayesian modelenvironmentF-statisticsgenetic structureMeleagris gallopavomicrosatellite markerspopulation geneticstyping

Identifiers

PMID36445341
PMCPMC9857098
OpenAlexW4310269996

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.