Evidence map›Paper›PMID 36445135›Full record

ArticleMolecular and cellular biology2022

Deubiquitinase OTUD1 Resolves Stalled Translation on polyA and Rare Codon Rich mRNAs.

Renata Snaurova, Alexander Vdovin, Michal Durech, Jakub Nezval, David Zihala, Tomas Jelinek, Roman Hajek, Michal Simicek

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Renata Snaurova *Faculty of Medicine, University of Ostrava, Ostrava, Czech Republic.
Alexander Vdovin *Faculty of Medicine, University of Ostrava, Ostrava, Czech Republic.
Michal DurechFaculty of Medicine, University of Ostrava, Ostrava, Czech Republic.
Jakub NezvalFaculty of Science, University of Ostrava, Ostrava, Czech Republic.
David ZihalaFaculty of Medicine, University of Ostrava, Ostrava, Czech Republic.
Tomas JelinekFaculty of Medicine, University of Ostrava, Ostrava, Czech Republic.
Roman HajekFaculty of Medicine, University of Ostrava, Ostrava, Czech Republic.
Michal SimicekFaculty of Medicine, University of Ostrava, Ostrava, Czech Republic.ORCID 0000-0003-2388-2723
University of Ostrava · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

OTUD1 is a deubiquitinating enzyme involved in many cellular processes including cancer and innate, immune signaling pathways. Here, we perform a proximity labeling-based interactome study that identifies OTUD1 largely present in the translation and RNA metabolism protein complexes. Biochemical analysis validates OTUD1 association with ribosome subunits, elongation factors and the E3 ubiquitin ligase ZNF598 but not with the translation initiation machinery. OTUD1 catalytic activity suppresses polyA triggered ribosome stalling through inhibition of ZNF598-mediated RPS10 ubiquitination and stimulates formation of polysomes. Finally, analysis of gene expression suggests that OTUD1 regulates the stability of rare codon rich mRNAs by antagonizing ZNF598.

Indexed as

Carrier ProteinsPoly ACodonDeubiquitinating EnzymesProtein BiosynthesisRNA, MessengerUbiquitinationCarrier ProteinsCodonDeubiquitinating EnzymesPoly ARNA, Messengerribosome stallingtranslationubiquitination

Identifiers

PMID36445135
PMCPMC9753717
OpenAlexW4310459043

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.