Evidence map›Paper›PMID 36443572›Full record

ArticleNature chemical biology2023

Mechanism of high-mannose N-glycan breakdown and metabolism by Bifidobacterium longum.

Rosa L Cordeiro, Camila R Santos, Mariane N Domingues, Tatiani B Lima, Renan A S Pirolla, Mariana A B Morais, Felippe M Colombari, Renan Y Miyamoto, Gabriela F Persinoti, Antonio C Borges and 11 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

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  9. Effect ofFoods (Basel, Switzerland) · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 6 institutions in 3 countries.

Rosa L Cordeiro *Brazilian Biorenewables National Laboratory (LNBR), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil.
Camila R Santos *Brazilian Biorenewables National Laboratory (LNBR), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil.ORCID 0000-0003-0652-4211
Mariane N DominguesBrazilian Biorenewables National Laboratory (LNBR), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil.ORCID 0000-0003-0229-8261
Tatiani B LimaBrazilian Biorenewables National Laboratory (LNBR), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil.
Renan A S PirollaBrazilian Biorenewables National Laboratory (LNBR), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil.
Mariana A B MoraisBrazilian Biorenewables National Laboratory (LNBR), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil.ORCID 0000-0003-1012-1394
Felippe M ColombariBrazilian Biorenewables National Laboratory (LNBR), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil.ORCID 0000-0002-5431-1301
Renan Y MiyamotoBrazilian Biorenewables National Laboratory (LNBR), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil.
Gabriela F PersinotiBrazilian Biorenewables National Laboratory (LNBR), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil.ORCID 0000-0002-0975-7283
Antonio C BorgesBrazilian Nanotechnology National Laboratory (LNNano), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil.ORCID 0000-0003-0023-6403
Marcelo A de FariasBrazilian Nanotechnology National Laboratory (LNNano), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil.
Fabiane StoffelBrazilian Biorenewables National Laboratory (LNBR), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil.ORCID 0000-0001-9077-9932
Chao LiDepartment of Chemistry and Biochemistry, University of Maryland, College Park, MD, USA.
Fabio C GozzoInstitute of Chemistry, University of Campinas, Campinas, Brazil.
Marin van HeelBrazilian Nanotechnology National Laboratory (LNNano), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil.
Marcelo E GuerinStructural Glycobiology Laboratory, Biocruces Bizkaia Health Research Institute, Cruces University Hospital, Barakaldo, Spain.ORCID 0000-0001-9524-3184
Eric J SundbergDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, USA.ORCID 0000-0003-0478-3033
Lai-Xi WangDepartment of Chemistry and Biochemistry, University of Maryland, College Park, MD, USA.ORCID 0000-0003-4293-5819
Rodrigo V PortugalBrazilian Nanotechnology National Laboratory (LNNano), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil. rodrigo.portugal@lnnano.cnpem.br.
Priscila O GiuseppeBrazilian Biorenewables National Laboratory (LNBR), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil. priscila.giuseppe@lnbr.cnpem.br.ORCID 0000-0003-2094-7325
Mario T MurakamiBrazilian Biorenewables National Laboratory (LNBR), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil. mario.murakami@lnbr.cnpem.br.ORCID 0000-0002-0405-8010
Brazilian Center for Research in Energy and Materials · BRUniversidade Estadual de Campinas (UNICAMP) · BRUniversity of Maryland, College Park · USEmory University · USIkerbasque · ESUniversidade Federal de Santa Catarina · BR

Funding

Covergent Chemoenzymatic Synthesis of Glycopeptides and GlycoproteinsR01GM080374 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI WANG, LAI-XI · 2007 to 2021
$3.9M
Rationalizing glycoengineering strategies for immunotherapeutic antibodiesR01AI149297 · NIAID · EMORY UNIVERSITY · PI JEFFREY Victor RAVETCH, ERIC JOHN SUNDBERG · 2020 to 2026
$3.7M
NIAID NIH HHS R01 AI149297NIGMS NIH HHS R01 GM080374
6 · The paper itself

Abstract

Bifidobacteria are early colonizers of the human gut and play central roles in human health and metabolism. To thrive in this competitive niche, these bacteria evolved the capacity to use complex carbohydrates, including mammalian N-glycans. Herein, we elucidated pivotal biochemical steps involved in high-mannose N-glycan utilization by Bifidobacterium longum. After N-glycan release by an endo-β-N-acetylglucosaminidase, the mannosyl arms are trimmed by the cooperative action of three functionally distinct glycoside hydrolase 38 (GH38) α-mannosidases and a specific GH125 α-1,6-mannosidase. High-resolution cryo-electron microscopy structures revealed that bifidobacterial GH38 α-mannosidases form homotetramers, with the N-terminal jelly roll domain contributing to substrate selectivity. Additionally, an α-glucosidase enables the processing of monoglucosylated N-glycans. Notably, the main degradation product, mannose, is isomerized into fructose before phosphorylation, an unconventional metabolic route connecting it to the bifid shunt pathway. These findings shed light on key molecular mechanisms used by bifidobacteria to use high-mannose N-glycans, a perennial carbon and energy source in the intestinal lumen.

Indexed as

Bifidobacterium longumMannoseAnimalsBifidobacteriumCryoelectron MicroscopyGlycoside HydrolasesHumansMammalsMannosidasesPolysaccharidesGlycoside HydrolasesMannoseMannosidasesPolysaccharides

Identifiers

PMID36443572
PMCPMC10367113
OpenAlexW4310151386

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.