Evidence map›Paper›PMID 36441764›Full record

ArticlePLoS biology2022

A single N6-methyladenosine site regulates lncRNA HOTAIR function in breast cancer cells.

Allison M Porman, Justin T Roberts, Emily D Duncan, Madeline L Chrupcala, Ariel A Levine, Michelle A Kennedy, Michelle M Williams, Jennifer K Richer, Aaron M Johnson

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Review
  3. Methylation marks breast cancer metastasis: The roles of mThe Journal of biological chemistry · 2026
    Review
  4. Article
  5. Exosomal lncRNAsInternational journal of molecular sciences · 2026
    Article
  6. High-stoichiometry mRNA (New York, N.Y.) · 2026
    Article
  7. Review
  8. Review
  9. Review
  10. Review
  11. Review
  12. Article
  13. mNature structural & molecular biology · 2025
    Article
  14. Article
  15. Potential regulatory role of the mActa biochimica et biophysica Sinica · 2025
    Review
  16. Article
  17. The Multifaceted Roles ofNon-coding RNA · 2025
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Allison M PormanUniversity of Colorado Anschutz Medical Campus, Biochemistry and Molecular Genetics Department, Aurora, Colorado, United States of America.ORCID 0000-0001-8107-0366
Justin T RobertsUniversity of Colorado Anschutz Medical Campus, Biochemistry and Molecular Genetics Department, Aurora, Colorado, United States of America.ORCID 0000-0003-4433-1234
Emily D DuncanUniversity of Colorado Anschutz Medical Campus, Molecular Biology Graduate Program, Aurora, Colorado, United States of America.ORCID 0000-0003-2062-2942
Madeline L ChrupcalaUniversity of Colorado Anschutz Medical Campus, Biochemistry and Molecular Genetics Department, Aurora, Colorado, United States of America.
Ariel A LevineUniversity of Colorado Anschutz Medical Campus, Biochemistry and Molecular Genetics Department, Aurora, Colorado, United States of America.
Michelle A KennedyUniversity of Colorado Anschutz Medical Campus, Biochemistry and Molecular Genetics Department, Aurora, Colorado, United States of America.
Michelle M WilliamsDepartment of Pathology, University of Colorado Anschutz Medical Campus, Aurora, Colorado, United States of America.ORCID 0000-0002-7063-9147
Jennifer K RicherDepartment of Pathology, University of Colorado Anschutz Medical Campus, Aurora, Colorado, United States of America.
Aaron M JohnsonUniversity of Colorado Anschutz Medical Campus, Biochemistry and Molecular Genetics Department, Aurora, Colorado, United States of America.ORCID 0000-0003-4553-1078
University of Colorado Anschutz Medical Campus · US

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
Training Program in Cancer BiologyT32CA190216 · NCI · UNIVERSITY OF COLORADO DENVER · PI Craig T. Jordan · 2016 to 2026
$3.5M
Predoctoral Training Program in Molecular BiologyT32GM008730 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI PREKERIS, RYTIS, SCLAFANI, ROBERT A · 1999 to 2019
$3.3M
Mechanisms of heterochromatin targeting and epigenetic genome regulationR35GM144358 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI Aaron M. Johnson · 2022 to 2026
$2.1M
Androgen Receptor and Intersecting Pathways Critical to Breast Cancer SubtypesR01CA187733 · NCI · UNIVERSITY OF COLORADO DENVER · PI RICHER-MOUCHANTAT, JENNIFER · 2015 to 2019
$1.9M
Mechanisms of heterochromatin targeting and epigenetic genome regulationR35GM119575 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI JOHNSON, AARON M. · 2016 to 2020
$1.9M
N6-methyladenosine in Candida white-opaque switching and oral infectionK99DE030528 · NIDCR · UNIVERSITY OF COLORADO DENVER · PI SWAIN, ALLISON MARLY PORMAN · 2022 to 2023
$214k
Impact of heme catabolism on triple negative breast cancer metastasis via immune-suppressionF32CA239436 · NCI · UNIVERSITY OF COLORADO DENVER · PI WILLIAMS, MICHELLE M · 2020 to 2021
$142k
Role of hypoxia in altering hnRNP A2B1-mediated interaction with m6A to promote breast cancer progressionF31CA247343 · NCI · UNIVERSITY OF COLORADO DENVER · PI ROBERTS, JUSTIN T · 2020 to 2021
$61k
NCI NIH HHS F31 CA247343NCI NIH HHS F32 CA239436NCI NIH HHS P30 CA046934NCI NIH HHS R01 CA187733NCI NIH HHS T32 CA190216NIDCR NIH HHS K99 DE030528NIGMS NIH HHS R35 GM119575NIGMS NIH HHS R35 GM144358NIGMS NIH HHS T32 GM008730
6 · The paper itself

Abstract

N6-methyladenosine (m6A) modification of RNA regulates normal and cancer biology, but knowledge of its function on long noncoding RNAs (lncRNAs) remains limited. Here, we reveal that m6A regulates the breast cancer-associated human lncRNA HOTAIR. Mapping m6A in breast cancer cell lines, we identify multiple m6A sites on HOTAIR, with 1 single consistently methylated site (A783) that is critical for HOTAIR-driven proliferation and invasion of triple-negative breast cancer (TNBC) cells. Methylated A783 interacts with the m6A "reader" YTHDC1, promoting chromatin association of HOTAIR, proliferation and invasion of TNBC cells, and gene repression. A783U mutant HOTAIR induces a unique antitumor gene expression profile and displays loss-of-function and antimorph behaviors by impairing and, in some cases, causing opposite gene expression changes induced by wild-type (WT) HOTAIR. Our work demonstrates how modification of 1 base in an lncRNA can elicit a distinct gene regulation mechanism and drive cancer-associated phenotypes.

Indexed as

NeoplasmsRNA, Long NoncodingBiologyHumansRNA, Long Noncoding

Identifiers

PMID36441764
PMCPMC9731500
OpenAlexW4310089709

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.