Evidence map›Paper›PMID 36440862›Full record

ArticleThe journal of physical chemistry. B2022

Molecular Dynamics Simulations of Rhodamine B Zwitterion Diffusion in Polyelectrolyte Solutions.

Peter K Walhout, Zhe He, Bercem Dutagaci, Grzegorz Nawrocki, Michael Feig

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Peter K WalhoutChemistry Department, Wheaton College, 501 College Ave., Wheaton, Illinois60187, United States.ORCID 0000-0003-0886-835X
Zhe HeChemistry Department, Wheaton College, 501 College Ave., Wheaton, Illinois60187, United States.
Bercem DutagaciBiochemistry and Molecular Biology, Michigan State University, 603 Wilson Road, Room 218, East Lansing, Michigan48824, United States.
Grzegorz NawrockiBiochemistry and Molecular Biology, Michigan State University, 603 Wilson Road, Room 218, East Lansing, Michigan48824, United States.
Michael FeigBiochemistry and Molecular Biology, Michigan State University, 603 Wilson Road, Room 218, East Lansing, Michigan48824, United States.ORCID 0000-0001-9380-6422

Funding

Modeling and dynamics of biomolecules on cellular scalesR35GM126948 · NIGMS · MICHIGAN STATE UNIVERSITY · PI Michael Feig · 2018 to 2026
$3.2M
NIGMS NIH HHS R35 GM126948
6 · The paper itself

Abstract

Polyelectrolytes continue to find wide interest and application in science and engineering, including areas such as water purification, drug delivery, and multilayer thin films. We have been interested in the dynamics of small molecules in a variety of polyelectrolyte (PE) environments; in this paper, we report simulations and analysis of the small dye molecule rhodamine B (RB) in several very simple polyelectrolyte solutions. Translational diffusion of the RB zwitterion has been measured in fully atomistic, 2 μs long molecular dynamics simulations in four different polyelectrolyte solutions. Two solutions contain the common polyanion sodium poly(styrene sulfonate) (PSS), one with a 30-mer chain and the other with 10 trimers. The other two solutions contain the common polycation poly(allyldimethylammonium) chloride (PDDA), one with two 15-mers and the other with 10 trimers. RB diffusion was also simulated in several polymer-free solutions to verify its known experimental value for the translational diffusion coefficient,

Indexed as

Molecular Dynamics SimulationRhodaminesrhodamine BRhodamines

Identifiers

PMID36440862
PMCPMC9813770

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.