Evidence map›Paper›PMID 36439844›Full record

ArticleFrontiers in microbiology2022

Soil composition and rootstock genotype drive the root associated microbial communities in young grapevines.

Romain Darriaut, Livio Antonielli, Guilherme Martins, Patricia Ballestra, Philippe Vivin, Elisa Marguerit, Birgit Mitter, Isabelle Masneuf-Pomarède, Stéphane Compant, Nathalie Ollat and 1 more

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Romain DarriautEGFV, Université de Bordeaux, Bordeaux Sciences Agro, Villenave d'Ornon, France.
Livio AntonielliBioresources Unit, Center for Health and Bioresources, AIT Austrian Institute of Technology GmbH, Tulln, Austria.
Guilherme MartinsUniv. Bordeaux, Bordeaux INP, INRAE, OENO, UMR 1366, ISVV, Villenave d'Ornon, France.
Patricia BallestraUniv. Bordeaux, Bordeaux INP, INRAE, OENO, UMR 1366, ISVV, Villenave d'Ornon, France.
Philippe VivinEGFV, Université de Bordeaux, Bordeaux Sciences Agro, Villenave d'Ornon, France.
Elisa MargueritEGFV, Université de Bordeaux, Bordeaux Sciences Agro, Villenave d'Ornon, France.
Birgit MitterBioresources Unit, Center for Health and Bioresources, AIT Austrian Institute of Technology GmbH, Tulln, Austria.
Isabelle Masneuf-PomarèdeUniv. Bordeaux, Bordeaux INP, INRAE, OENO, UMR 1366, ISVV, Villenave d'Ornon, France.
Stéphane CompantBioresources Unit, Center for Health and Bioresources, AIT Austrian Institute of Technology GmbH, Tulln, Austria.
Nathalie OllatEGFV, Université de Bordeaux, Bordeaux Sciences Agro, Villenave d'Ornon, France.
Virginie LauvergeatEGFV, Université de Bordeaux, Bordeaux Sciences Agro, Villenave d'Ornon, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Soil microbiota plays a significant role in plant development and health and appears to be a major component of certain forms of grapevine decline. A greenhouse experiment was conducted to study the impact of the microbiological quality of the soil and grapevine rootstock genotype on the root microbial community and development of young plants. Two rootstocks heterografted with the same scion were grown in two vineyard soils differing in microbial composition and activities. After 4 months, culture-dependent approaches and amplicon sequencing of bacterial 16S rRNA gene and fungal ITS were performed on roots, rhizosphere and bulk soil samples. The root mycorrhizal colonization and number of cultivable microorganisms in the rhizosphere compartment of both genotypes were clearly influenced by the soil status. The fungal diversity and richness were dependent on the soil status and the rootstock, whereas bacterial richness was affected by the genotype only. Fungal genera associated with grapevine diseases were more abundant in declining soil and related root samples. The rootstock affected the compartmentalization of microbial communities, underscoring its influence on microorganism selection. Fluorescence

Indexed as

arbuscular mycorrhizaegrapevine declinemicrobiomerhizosphereroot endosphere

Identifiers

PMID36439844
PMCPMC9685171

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.