Evidence map›Paper›PMID 36437991›Full record

ArticleFrontiers in aging neuroscience2022

Integrated bioinformatics-based identification of diagnostic markers in Alzheimer disease.

Danmei Chen, Yunpeng Zhang, Rui Qiao, Xiangyu Kong, Hequan Zhong, Xiaokun Wang, Jie Zhu, Bing Li

Open access · goldAbstract read
In one paragraph

Article in Frontiers in aging neuroscience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Danmei ChenResearch Center for Clinical Medicine, Jinshan Hospital Affiliated to Fudan University, Shanghai, China.
Yunpeng ZhangDepartment of Neurology, Jinshan Hospital, Fudan University, Shanghai, China.
Rui QiaoCollege of Acupuncture-Massage and Rehabilitation, Yunnan University of Traditional Chinese Medicine, Kunming, China.
Xiangyu KongResearch Center for Clinical Medicine, Jinshan Hospital Affiliated to Fudan University, Shanghai, China.
Hequan ZhongResearch Center for Clinical Medicine, Jinshan Hospital Affiliated to Fudan University, Shanghai, China.
Xiaokun WangResearch Center for Clinical Medicine, Jinshan Hospital Affiliated to Fudan University, Shanghai, China.
Jie ZhuDepartment of Rehabilitation, Jinshan Hospital, Fudan University, Shanghai, China.
Bing LiResearch Center for Clinical Medicine, Jinshan Hospital Affiliated to Fudan University, Shanghai, China.
Jinshan Hospital of Fudan University · CNYunnan University of Traditional Chinese Medicine · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alzheimer disease (AD) is a progressive neurodegenerative disease resulting from the accumulation of extracellular amyloid beta (Aβ) and intracellular neurofibrillary tangles. There are currently no objective diagnostic measures for AD. The aim of this study was to identify potential diagnostic markers for AD and evaluate the role of immune cell infiltration in disease pathogenesis. AD expression profiling data for human hippocampus tissue (GSE48350 and GSE5281) were downloaded from the Gene Expression Omnibus database. Differentially expressed genes (DEGs) were identified using R software and the Human Protein Atlas database was used to screen AD-related DEGs. We performed functional enrichment analysis and established a protein-protein interaction (PPI) network to identify disease-related hub DEGs. The fraction of infiltrating immune cells in samples was determined with the Microenvironment Cell Populations-counter method. The random forest algorithm was used to develop a prediction model and receiver operating characteristic (ROC) curve analysis was performed to validate the diagnostic utility of the candidate AD markers. The correlation between expression of the diagnostic markers and immune cell infiltration was also analyzed. A total of 107 AD-related DEGs were screened in this study, including 28 that were upregulated and 79 that were downregulated. The DEGs were enriched in the Gene Ontology terms GABAergic synapse, Morphine addiction, Nicotine addiction, Phagosome, and Synaptic vesicle cycle. We identified 10 disease-related hub genes and 20 candidate diagnostic genes. Synaptophysin (

Indexed as

Alzheimer’s diseasebioinformatics analysisdiagnosis biomarkersimmune infiltrationmachine learning

Identifiers

PMID36437991
PMCPMC9686423
OpenAlexW4308869085

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.