Evidence map›Paper›PMID 36436858›Full record

ArticleCarbohydrate polymers2023

Selective 2-desulfation of tetrasaccharide-repeating sulfated fucans during oligosaccharide production by mild acid hydrolysis.

Seon Beom Kim, Marwa Farrag, Sushil K Mishra, Sandeep K Misra, Joshua S Sharp, Robert J Doerksen, Vitor H Pomin

Open access · greenAbstract read
In one paragraph

Article in Carbohydrate polymers, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. The Sea CucumberJournal of natural products · 2023
    Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Seon Beom KimDepartment of BioMolecular Sciences, University of Mississippi, Oxford, MS, United States; Department of Food Science & Technology, College of Natural Resources and Life Science, Pusan National University, Miryang, Republic of Korea.
Marwa FarragDepartment of BioMolecular Sciences, University of Mississippi, Oxford, MS, United States; Department of Pharmacognosy, Faculty of Pharmacy, Assiut University, Assiut, Egypt.
Sushil K MishraDepartment of BioMolecular Sciences, University of Mississippi, Oxford, MS, United States.
Sandeep K MisraDepartment of BioMolecular Sciences, University of Mississippi, Oxford, MS, United States.
Joshua S SharpDepartment of BioMolecular Sciences, University of Mississippi, Oxford, MS, United States; Department of Chemistry and Biochemistry, University of Mississippi, Oxford, MS, United States.
Robert J DoerksenDepartment of BioMolecular Sciences, University of Mississippi, Oxford, MS, United States; Research Institute of Pharmaceutical Sciences, School of Pharmacy, University of Mississippi, Oxford, MS, United States.
Vitor H PominDepartment of BioMolecular Sciences, University of Mississippi, Oxford, MS, United States; Research Institute of Pharmaceutical Sciences, School of Pharmacy, University of Mississippi, Oxford, MS, United States. Electronic address: vpomin@olemiss.edu.
University of Mississippi · US

Funding

Tracking Glycosylation State with Fluorinated Glycosides ProbesP20GM130460 · NIGMS · UNIVERSITY OF MISSISSIPPI · PI Joshua S Sharp · 2020 to 2026
$17.9M
Disruption of CS/KSPG-Mediated Neuronal Outgrowth InhibitionR03NS110996 · NINDS · UNIVERSITY OF MISSISSIPPI · PI POMIN, VITOR HUGO · 2020 to 2020
$142k
NIGMS NIH HHS P20 GM130460NINDS NIH HHS R03 NS110996
6 · The paper itself

Abstract

Sulfated fucans (SFs) from echinoderms, such as sea cucumbers and sea urchins, present linear and regular sulfation patterns within defined oligosaccharide building blocks. The high molecular weights of these polymers pose a problem in advanced structure-activity relationship studies for which derived oligosaccharides are more appropriate tools for investigation. However, enzymes capable of specifically depolymerizing SFs, fucanases, are not very common. Scarce abundance and unknown catalytic activities are additional barriers to exploiting fucanases. Oligosaccharide production by controlled chemical reactions such as mild acid hydrolysis then becomes a convenient strategy. As a consequence, physicochemical studies are necessary to understand the structural modifications caused on SFs by this chemical hydrolysis. Hence, in this work, we subjected three tetrasaccharide-repeating SFs from sea cucumbers, Isostichopus badionotus (IbSF), Holothuria floridana (HfSF), and Lytechinus variegatus (LvSF) to mild acid hydrolysis for oligosaccharide production. Interestingly, selective 2-desulfation reaction was observed in all three SFs. Through our study, we indicate that selective 2-desulfation is a common and expected phenomenon in oligosaccharide production by mild acid hydrolysis of SFs, including those composed of tetrasaccharide-repeating units.

Indexed as

PolysaccharidesSea CucumbersAnimalsHydrolysisOligosaccharidesfucoidanOligosaccharidesPolysaccharidesMass spectrometryMild acid hydrolysisMolecular dynamicsNuclear magnetic resonanceStereospecific desulfationSulfated fucans

Identifiers

PMID36436858
PMCPMC9745898
OpenAlexW4308616051

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.