Evidence map›Paper›PMID 36435957›Full record

ArticleBrazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]2023

Cryptic fungal diversity revealed by DNA metabarcoding in historic wooden structures at Whalers Bay, Deception Island, maritime Antarctic.

Láuren Machado Drumond de Souza, Elisa Amorim Amâncio Teixeira, Lívia da Costa Coelho, Fabyano Alvares Cardoso Lopes, Peter Convey, Micheline Carvalho-Silva, Paulo Eduardo Aguiar Saraiva Câmara, Luiz Henrique Rosa

Open access · greenAbstract read
In one paragraph

Article in Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology], 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Láuren Machado Drumond de SouzaLaboratório de Microbiologia Polar E Conexões Tropicais, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, P. O. Box 486, Belo Horizonte, MG, CEP, 31270-901, Brasil.
Elisa Amorim Amâncio TeixeiraLaboratório de Microbiologia Polar E Conexões Tropicais, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, P. O. Box 486, Belo Horizonte, MG, CEP, 31270-901, Brasil.
Lívia da Costa CoelhoLaboratório de Microbiologia Polar E Conexões Tropicais, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, P. O. Box 486, Belo Horizonte, MG, CEP, 31270-901, Brasil.
Fabyano Alvares Cardoso LopesLaboratório de Microbiologia, Universidade Federal Do Tocantins, Porto Nacional, Brasil.
Peter ConveyBritish Antarctic Survey, NERC, High Cross, Madingley Road, Cambridge, CB3 0ET, UK.
Micheline Carvalho-SilvaDepartamento de Botânica, Universidade de Brasília, Brasília, Brasil.
Paulo Eduardo Aguiar Saraiva CâmaraDepartamento de Botânica, Universidade de Brasília, Brasília, Brasil.
Luiz Henrique RosaLaboratório de Microbiologia Polar E Conexões Tropicais, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, P. O. Box 486, Belo Horizonte, MG, CEP, 31270-901, Brasil. lhrosa@icb.ufmg.br.ORCID http://orcid.org/0000-0001-9749-5182
Universidade Federal de Minas Gerais · BRUniversidade de Brasília · BRBritish Antarctic Survey · GBUniversidade Federal do Tocantins · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We provide the first assessment of fungal diversity associated with historic wooden structures at Whalers Bay (Heritage Monument 71), Deception Island, maritime Antarctic, using DNA metabarcoding. We detected a total of 177 fungal amplicon sequence variants (ASVs) dominated by the phyla Ascomycota, Basidiomycota, Mortierellomycota, Chytridiomycota, Monoblepharomycota, Rozellomycota, and Zoopagomycota. The assemblages were dominated by Helotiales sp. 1 and Herpotrichiellaceae sp. 1. Functional assignments indicated that the taxa detected were dominated by saprotrophic, plant and animal pathogenic, and symbiotic taxa. Metabarcoding revealed the presence of a rich and complex fungal community, which may be due to the wooden structures acting as baits attracting taxa to niches sheltered against extreme conditions, generating a hotspot for fungi in Antarctica. The sequences assigned included both cosmopolitan and endemic taxa, as well as potentially unreported diversity. The detection of DNA assigned to taxa of human and animal opportunistic pathogens raises a potential concern as Whalers Bay is one of the most popular visitor sites in Antarctica. The use of metabarcoding to detect DNA present in environmental samples does not confirm the presence of viable or metabolically active fungi and further studies using different culturing conditions and media, different growth temperatures and incubation periods, in combination with further molecular approaches such as shotgun sequencing are now required to clarify the functional ecology of these fungi.

Indexed as

AscomycotaDNA Barcoding, TaxonomicAnimalsAntarctic RegionsBaysDeceptionDNADNA, FungalFungiHumansDNADNA, FungalAntarcticaExtremophilesFungiHeritage siteTaxonomy

Identifiers

PMID36435957
PMCPMC9944150
OpenAlexW4309988183

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.