Evidence map›Paper›PMID 36435939›Full record

ArticleCommunications biology2022

Single-cell multiomics reveals the complexity of TGFβ signalling to chromatin in iPSC-derived kidney organoids.

Jessica L Davis, Ciaran Kennedy, Shane Clerkin, Niall J Treacy, Thomas Dodd, Catherine Moss, Alison Murphy, Derek P Brazil, Gerard Cagney, Dermot F Brougham and 4 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Fibrosis-the tale of H3K27 histone methyltransferases and demethylases.Frontiers in cell and developmental biology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 3 countries.

Jessica L DavisUCD School of Biomolecular and Biomedical Science, UCD Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Belfield, Dublin, 4, Ireland.ORCID 0000-0003-1548-6114
Ciaran KennedyUCD School of Biomolecular and Biomedical Science, UCD Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Belfield, Dublin, 4, Ireland.ORCID 0000-0003-1967-8754
Shane ClerkinUCD School of Biomolecular and Biomedical Science, UCD Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Belfield, Dublin, 4, Ireland.ORCID 0000-0002-3493-0439
Niall J TreacyUCD School of Biomolecular and Biomedical Science, UCD Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Belfield, Dublin, 4, Ireland.ORCID 0000-0003-4791-6633
Thomas DoddUCD School of Biomolecular and Biomedical Science, UCD Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Belfield, Dublin, 4, Ireland.
Catherine MossUCD Genomics Core Facility, UCD Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Belfield, Dublin, 4, Ireland.
Alison MurphyUCD Genomics Core Facility, UCD Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Belfield, Dublin, 4, Ireland.
Derek P BrazilWellcome-Wolfson Institute for Experimental Medicine, Queen's University Belfast, BT9 7BL, Northern Ireland, UK.
Gerard CagneyUCD School of Biomolecular and Biomedical Science, UCD Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Belfield, Dublin, 4, Ireland.ORCID 0000-0001-7189-9496
Dermot F BroughamUCD School of Chemistry, University College Dublin, Belfield, Dublin, 4, Ireland.
Rabi MuradSanford Burnham Prebys Institute for Medical Discovery, La Jolla, CA, 92037, USA.
Darren FinlaySanford Burnham Prebys Institute for Medical Discovery, La Jolla, CA, 92037, USA.ORCID 0000-0002-8718-9453
Kristiina VuoriSanford Burnham Prebys Institute for Medical Discovery, La Jolla, CA, 92037, USA.ORCID 0000-0002-5657-0681
John CreanUCD School of Biomolecular and Biomedical Science, UCD Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Belfield, Dublin, 4, Ireland. john.crean@ucd.ie.
University College Dublin · IEDiscovery Institute · USQueen's University Belfast · GB

Funding

Tumor Microenvironment and Cancer ImmunologyP30CA030199 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI ELENA B PASQUALE · 1985 to 2026
$107.2M
NCI NIH HHS P30 CA030199Science Foundation Ireland 16/IA/4584Science Foundation Ireland 19/FFP/6833
6 · The paper itself

Abstract

TGFβ1 plays a regulatory role in the determination of renal cell fate and the progression of renal fibrosis. Here we show an association between SMAD3 and the histone methyltransferase, EZH2, during cell differentiation; ChIP-seq revealed that SMAD3 and EZH2 co-occupy the genome in iPSCs and in iPSC-derived nephron progenitors. Through integration of single cell gene expression and epigenome profiling, we identified de novo ACTA2

Indexed as

ChromatinInduced Pluripotent Stem CellsFibrosisHumansKidneyOrganoidsProtein KinasesRepressor ProteinsTransforming Growth Factor betaChromatinNUAK1 protein, humanProtein KinasesRepressor ProteinsTransforming Growth Factor beta

Identifiers

PMID36435939
PMCPMC9701233
OpenAlexW4310273470

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.