Evidence map›Paper›PMID 36435899›Full record

ArticleAMB Express2022

Transcriptome profiling of Paraburkholderia aromaticivorans AR20-38 during ferulic acid bioconversion.

Caroline Poyntner, Thomas Marek Ludwikowski, Andreas Otto Wagner, Rosa Margesin

Abstract read
In one paragraph

Article in AMB Express, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Caroline PoyntnerDepartment of Microbiology, University of Innsbruck, Technikerstraße 25, 6020, Innsbruck, Austria. caroline.poyntner@uibk.ac.at.ORCID http://orcid.org/0000-0002-7846-445X
Thomas Marek LudwikowskiDepartment of Microbiology, University of Innsbruck, Technikerstraße 25, 6020, Innsbruck, Austria.
Andreas Otto WagnerDepartment of Microbiology, University of Innsbruck, Technikerstraße 25, 6020, Innsbruck, Austria.ORCID http://orcid.org/0000-0002-6009-8498
Rosa MargesinDepartment of Microbiology, University of Innsbruck, Technikerstraße 25, 6020, Innsbruck, Austria.ORCID http://orcid.org/0000-0003-4307-7238

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The importance and need of renewable-based, sustainable feedstocks increased in recent years. Lignin-derived monomers have high potential, energetic and economic value in the microbial bioconversion to valuable biomolecules. The bacterium Paraburkholderia aromaticivorans AR20-38 produces a remarkable yield of vanillic acid from ferulic acid at moderate and low temperatures and is therefore a good candidate for biotechnological applications. To understand this bioconversion process on a molecular level, a transcriptomic study during the bioconversion process was conducted to elucidate gene expression patterns. Differentially expressed genes, cellular transporters as well as transcriptional factors involved in the bioconversion process could be described. Additional enzymes known for xenobiotic degradation were differentially expressed and a potential membrane vesicle mechanism was detected. The bioconversion mechanism on a transcriptional level of P. aromaticivorans could be elucidated and results can be used for strain optimization. Additionally, the transcriptome study showed the high potential of the strain for other degradation applications.

Indexed as

BioconversionFerulic acidParaburkholderiaTranscriptomeVanillic acid

Identifiers

PMID36435899
PMCPMC9701309

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.