Evidence map›Paper›PMID 36435815›Full record

ArticleNature communications2022

Structural basis for lipid and copper regulation of the ABC transporter MsbA.

Jixing Lyu, Chang Liu, Tianqi Zhang, Samantha Schrecke, Nicklaus P Elam, Charles Packianathan, Georg K A Hochberg, David Russell, Minglei Zhao, Arthur Laganowsky

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 29 citations in OpenAlex.

  1. Biogenic Selenium Nanoparticles from Food-GradeFoods (Basel, Switzerland) · 2026
    Article
  2. Article
  3. Article
  4. Molecular Basis for the Activation ofJournal of the American Chemical Society · 2025
    Article
  5. Article
  6. TREK2 Lipid Binding Preferences Revealed by Native Mass Spectrometry.Journal of the American Society for Mass Spectrometry · 2024
    Article
  7. The inactivation ofiScience · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Jixing LyuDepartment of Chemistry, Texas A&M University, College Station, 77843, TX, USA.
Chang LiuDepartment of Biochemistry and Molecular biology, University of Chicago, Chicago, 60637, IL, USA.
Tianqi ZhangDepartment of Chemistry, Texas A&M University, College Station, 77843, TX, USA.
Samantha SchreckeDepartment of Chemistry, Texas A&M University, College Station, 77843, TX, USA.ORCID 0000-0002-5228-0310
Nicklaus P ElamDepartment of Chemistry, Texas A&M University, College Station, 77843, TX, USA.
Charles PackianathanDepartment of Chemistry, Texas A&M University, College Station, 77843, TX, USA.
Georg K A HochbergMax Planck Institute for Terrestrial Microbiology and Department of Chemistry, University of Marburg, Marburg, Germany.
David RussellDepartment of Chemistry, Texas A&M University, College Station, 77843, TX, USA.ORCID 0000-0003-0830-3914
Minglei ZhaoDepartment of Biochemistry and Molecular biology, University of Chicago, Chicago, 60637, IL, USA.ORCID 0000-0001-5832-6060
Arthur LaganowskyDepartment of Chemistry, Texas A&M University, College Station, 77843, TX, USA. ALaganowsky@chem.tamu.edu.ORCID 0000-0001-5012-5547
Texas A&M University · USUniversity of Chicago · USLoewe Center for Synthetic Microbiology · DE

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Frank V Murphy · 2018 to 2026
$34.2M
Waters Select Series Cyclic IMS for P41 Native MS Resource Application to Alzheimer's DiseaseP41GM128577 · NIGMS · OHIO STATE UNIVERSITY · PI WYSOCKI, VICKI H. · 2018 to 2022
$7.6M
Understanding the role of lipids in structure and function of membrane proteinsRM1GM145416 · NIGMS · TEXAS A&M UNIVERSITY · PI Erin S Baker, Arthur D Laganowsky · 2022 to 2026
$7.4M
Native ion mobility mass spectrometry studies of potassium inward rectifier channels: insight into gating and lipid bindingDP2GM123486 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI LAGANOWSKY, ARTHUR D · 2016 to 2016
$2.2M
Structural and Functional Studies of Molecular Machines Involved in Chemical Modifications of MacromoleculesR35GM143052 · NIGMS · UNIVERSITY OF CHICAGO · PI ZHAO, MINGLEI · 2021 to 2025
$2.1M
Beagle-3: A Shared GPU Cluster for Biomolecular SciencesS10OD028655 · OD · UNIVERSITY OF CHICAGO · PI ROUX, BENOIT · 2020 to 2020
$2.0M
Development of high resolution mobility measurements for structural biologyR01GM121751 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI CLEMMER, DAVID E., LAGANOWSKY, ARTHUR D · 2017 to 2020
$1.7M
Innovative Native Ion Mobility Approaches for Transformational Measurements in Structural BiologyR01GM138863 · NIGMS · TEXAS A&M UNIVERSITY · PI CLOWERS, BRIAN, LAGANOWSKY, ARTHUR D · 2020 to 2023
$1.2M
Developing new tools to probe membrane protein-lipid interactions for biomedical applicationsR01GM139876 · NIGMS · TEXAS A&M UNIVERSITY · PI LAGANOWSKY, ARTHUR D · 2021 to 2024
$1.2M
NIGMS NIH HHS DP2 GM123486NIGMS NIH HHS P30 GM124165NIGMS NIH HHS P41 GM128577NIGMS NIH HHS R01 GM121751NIGMS NIH HHS R01 GM138863NIGMS NIH HHS R01 GM139876NIGMS NIH HHS R35 GM143052NIGMS NIH HHS RM1 GM145416NIH HHS S10 OD028655
6 · The paper itself

Abstract

A critical step in lipopolysaccharide (LPS) biogenesis involves flipping lipooligosaccharide, an LPS precursor, from the cytoplasmic to the periplasmic leaflet of the inner membrane, an operation carried out by the ATP-binding cassette transporter MsbA. Although LPS binding to the inner cavity of MsbA is well established, the selectivity of MsbA-lipid interactions at other site(s) remains poorly understood. Here we use native mass spectrometry (MS) to characterize MsbA-lipid interactions and guide structural studies. We show the transporter co-purifies with copper(II) and metal binding modulates protein-lipid interactions. A 2.15 Å resolution structure of an N-terminal region of MsbA in complex with copper(II) is presented, revealing a structure reminiscent of the GHK peptide, a high-affinity copper(II) chelator. Our results demonstrate conformation-dependent lipid binding affinities, particularly for the LPS-precursor, 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)

Indexed as

ATP-Binding Cassette TransportersLipopolysaccharidesAdenosine DiphosphateBacterial ProteinsCopperEscherichia coliAdenosine DiphosphateATP-Binding Cassette TransportersBacterial ProteinsCopperLipopolysaccharides

Identifiers

PMID36435815
PMCPMC9701195
OpenAlexW4309988239

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.