Evidence map›Paper›PMID 36435798›Full record

Trial reportNature communications2022

Characterisation of SARS-CoV-2 genomic variation in response to molnupiravir treatment in the AGILE Phase IIa clinical trial.

I'ah Donovan-Banfield, Rebekah Penrice-Randal, Hannah Goldswain, Aleksandra M Rzeszutek, Jack Pilgrim, Katie Bullock, Geoffrey Saunders, Josh Northey, Xiaofeng Dong, Yan Ryan and 24 more

Registry-linked trialOpen access · goldAbstract readClinical Trial, Phase IIRandomized Controlled Trial
In one paragraph

Trial report in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04746183 (AGILE), which is not on this map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
4.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04746183 phase1 / phase2recruitingnot on this map

AGILE: Seamless Phase I/IIa Platform for the Rapid Evaluation of Candidates for COVID-19 Treatment

TypeinterventionalSponsorUniversity of LiverpoolRan2020 to 2027Enrolled600ConditionsCovid19ArmsCST-2: EIDD-2801, CST-2: Placebo, Nitazoxanide, VIR-7832, VIR-7831
3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 42 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Trial
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. COVID-19 therapeutics.Clinical microbiology reviews · 2024
    Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 10 institutions in 2 countries.

I'ah Donovan-BanfieldDepartment of Infection Biology and Microbiomes, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK.ORCID 0000-0002-5124-2427
Rebekah Penrice-RandalDepartment of Infection Biology and Microbiomes, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK.ORCID 0000-0002-0653-2097
Hannah GoldswainDepartment of Infection Biology and Microbiomes, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK.ORCID 0000-0003-4194-8714
Aleksandra M RzeszutekDepartment of Evolution, Ecology and Behaviour, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK.
Jack PilgrimDepartment of Evolution, Ecology and Behaviour, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK.
Katie BullockGCPLab Facility, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, UK.
Geoffrey SaundersSouthampton Clinical Trials Unit, University of Southampton, Southampton, UK.
Josh NortheySouthampton Clinical Trials Unit, University of Southampton, Southampton, UK.
Xiaofeng DongDepartment of Infection Biology and Microbiomes, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK.
Yan RyanDepartment of Infection Biology and Microbiomes, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK.ORCID 0000-0002-4708-5350
Helen ReynoldsDepartment of Pharmacology and Therapeutics, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, UK.
Michelle TetlowDepartment of Pharmacology and Therapeutics, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, UK.
Lauren E WalkerDepartment of Pharmacology and Therapeutics, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, UK.
Richard FitzGeraldDepartment of Pharmacology and Therapeutics, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, UK.
Colin HaleNIHR Royal Liverpool and Broadgreen Clinical Research Facility, Liverpool University Hospitals NHS Foundation Trust, Liverpool, UK.
Rebecca LyonNIHR Royal Liverpool and Broadgreen Clinical Research Facility, Liverpool University Hospitals NHS Foundation Trust, Liverpool, UK.
Christie WoodsNIHR Royal Liverpool and Broadgreen Clinical Research Facility, Liverpool University Hospitals NHS Foundation Trust, Liverpool, UK.
Shazaad AhmadNIHR Manchester Clinical Research Facility, Manchester University NHS Foundation Trust, Manchester, UK.
Dennis HadjiyiannakisNIHR Lancashire Clinical Research Facility, Lancashire Teaching Hospitals NHS Foundation Trust, Preston, UK.
Jimstan PeriselnerisNIHR Kings Clinical Research Facility, King's College Hospital NHS Foundation Trust, London, UK.
Emma KnoxSouthampton Clinical Trials Unit, University of Southampton, Southampton, UK.
Calley MiddletonSouthampton Clinical Trials Unit, University of Southampton, Southampton, UK.
Lara Lavelle-LanghamGCPLab Facility, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, UK.
Victoria ShawGCPLab Facility, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, UK.
William GreenhalfGCPLab Facility, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, UK.
Thomas EdwardsCentre for Drugs and Diagnostics, Liverpool School of Tropical Medicine, Liverpool, UK.ORCID 0000-0003-4058-4461
David G LallooLiverpool School of Tropical Medicine, Liverpool, UK.ORCID 0000-0001-7680-2200
Christopher J EdwardsHuman Development and Health School, University of Southampton, Southampton, UK.
Alistair C DarbyDepartment of Infection Biology and Microbiomes, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK.
Miles W CarrollNIHR Health Protection Research Unit in Emerging and Zoonotic Infections, Liverpool, UK.
Gareth GriffithsSouthampton Clinical Trials Unit, University of Southampton, Southampton, UK.
Saye H KhooDepartment of Pharmacology and Therapeutics, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, UK.
Julian A HiscoxDepartment of Infection Biology and Microbiomes, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK. julian.hiscox@liverpool.ac.uk.ORCID 0000-0002-6582-0275
Thomas FletcherNIHR Health Protection Research Unit in Emerging and Zoonotic Infections, Liverpool, UK. Tom.Fletcher@lstmed.ac.uk.
University of Liverpool · GBUniversity of Southampton · GBRoyal Liverpool and Broadgreen University Hospital NHS Trust · GBLiverpool School of Tropical Medicine · GBAgency for Science, Technology and Research · SGCentre for Human Genetics · GBKing's College Hospital NHS Foundation Trust · GBLancashire Teaching Hospitals NHS Foundation Trust · GBManchester University NHS Foundation Trust · GBUniversity Hospital Southampton NHS Foundation Trust · GB

Funding

Cancer Research UK C18616/A25153Medical Research Council MR/V028391/1Medical Research Council MR/W005611/1Wellcome TrustWellcome Trust 221590/Z/20/Z
6 · The paper itself

Abstract

Molnupiravir is an antiviral, currently approved by the UK Medicines and Healthcare products Regulatory Agency (MHRA) for treating at-risk COVID-19 patients, that induces lethal error catastrophe in SARS-CoV-2. How this drug-induced mechanism of action might impact the emergence of resistance mutations is unclear. To investigate this, we used samples from the AGILE Candidate Specific Trial (CST)-2 (clinical trial number NCT04746183). The primary outcomes of AGILE CST-2 were to measure the drug safety and antiviral efficacy of molnupiravir in humans (180 participants randomised 1:1 with placebo). Here, we describe the pre-specified exploratory virological endpoint of CST-2, which was to determine the possible genomic changes in SARS-CoV-2 induced by molnupiravir treatment. We use high-throughput amplicon sequencing and minor variant analysis to characterise viral genomics in each participant whose longitudinal samples (days 1, 3 and 5 post-randomisation) pass the viral genomic quality criteria (n = 59 for molnupiravir and n = 65 for placebo). Over the course of treatment, no specific mutations were associated with molnupiravir treatment. We find that molnupiravir significantly increased the transition:transversion mutation ratio in SARS-CoV-2, consistent with the model of lethal error catastrophe. This study highlights the utility of examining intra-host virus populations to strengthen the prediction, and surveillance, of potential treatment-emergent adaptations.

Indexed as

COVID-19 Drug TreatmentSARS-CoV-2Antiviral AgentsCytidineGenomicsHumansHydroxylaminesAntiviral AgentsCytidineHydroxylaminesmolnupiravir

Identifiers

PMID36435798
PMCPMC9701236
OpenAlexW4309988247

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.