Evidence map›Paper›PMID 36435177›Full record

ArticleCurrent biology : CB2023

Single-cell analysis of habituation in Stentor coeruleus.

Deepa Rajan, Tatyana Makushok, Asa Kalish, Lilibeth Acuna, Alex Bonville, Kathya Correa Almanza, Brenda Garibay, Eric Tang, Megan Voss, Athena Lin and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Current biology : CB, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Continual decision-making dynamics across biological organisms.Biological reviews of the Cambridge Philosophical Society · 2026
    Review
  3. Article
  4. Dynamical modeling of individual sensory reactivity and habituation learning.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
  6. Geometrical preference of anchoring sites in the unicellular organismProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Article
  8. Trainable computation in molecular networks.bioRxiv : the preprint server for biology · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. The "plant neurobiology" revolution.Plant signaling & behavior · 2024
    Review
  14. Minimal motifs for habituating systems.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  15. Article
  16. Phylogeny, morphology, and behavior of the new ciliate speciesbioRxiv : the preprint server for biology · 2024
    Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Deepa RajanDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA.
Tatyana MakushokDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA.
Asa KalishDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA.
Lilibeth AcunaCCC Summer course, Center for Cellular Construction, San Francisco State University, San Francisco, CA, USA.
Alex BonvilleCCC Summer course, Center for Cellular Construction, San Francisco State University, San Francisco, CA, USA.
Kathya Correa AlmanzaCCC Summer course, Center for Cellular Construction, San Francisco State University, San Francisco, CA, USA.
Brenda GaribayCCC Summer course, Center for Cellular Construction, San Francisco State University, San Francisco, CA, USA.
Eric TangCCC Summer course, Center for Cellular Construction, San Francisco State University, San Francisco, CA, USA.
Megan VossCCC Summer course, Center for Cellular Construction, San Francisco State University, San Francisco, CA, USA.
Athena LinDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA.
Kyle BarlowIntegrative Program in Quantitative Biology, University of California, San Francisco, San Francisco, CA, USA.
Patrick HarriganIntegrative Program in Quantitative Biology, University of California, San Francisco, San Francisco, CA, USA.
Mark M SlabodnickDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA.
Wallace F MarshallDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA. Electronic address: wallace.marshall@ucsf.edu.
San Francisco State University · USUniversity of California, San Francisco · USQB3 · US

Funding

Origins of Cell GeometryR35GM130327 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Wallace Marshall · 2019 to 2026
$5.3M
NIGMS NIH HHS R35 GM130327
6 · The paper itself

Abstract

Although learning is often viewed as a unique feature of organisms with complex nervous systems, single-celled organisms also demonstrate basic forms of learning. The giant ciliate Stentor coeruleus responds to mechanical stimuli by contracting into a compact shape, presumably as a defense mechanism. When a Stentor cell is repeatedly stimulated at a constant level of force, it will learn to ignore that stimulus but will still respond to stronger stimuli. Prior studies of habituation in Stentor reported a graded response, suggesting that cells transition through a continuous range of response probabilities. By analyzing single cells using an automated apparatus to deliver calibrated stimuli, we find that habituation occurs via a single step-like switch in contraction probability within each cell, with the graded response in a population arising from the random distribution of switching times in individual cells. This step-like response allows Stentor behavior to be represented by a simple two-state model whose parameters can be estimated from experimental measurements. We find that transition rates depend on stimulus force and also on the time between stimuli. The ability to measure the behavior of the same cell to the same stimulus allowed us to quantify the functional heterogeneity among single cells. Together, our results suggest that the behavior of Stentor is governed by a two-state stochastic machine whose transition rates are sensitive to the time series properties of the input stimuli.

Indexed as

CiliophoraHabituation, PsychophysiologicSingle-Cell AnalysisTime Factorscell behaviorcell statecellular cognitioncellular heterogeneityciliateMarkov modelsprotistsingle-cell learning

Identifiers

PMID36435177
PMCPMC9877177
OpenAlexW4310069178

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.