Evidence map›Paper›PMID 36434031›Full record

ArticleScientific reports2022

Suppressing gain-of-function proteins via CRISPR/Cas9 system in SCA1 cells.

Mariangela Pappadà, Ottavia Bonuccelli, Mattia Buratto, Riccardo Fontana, Mariaconcetta Sicurella, Anna Caproni, Silvia Fuselli, Andrea Benazzo, Roberto Bertorelli, Veronica De Sanctis and 5 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Mariangela PappadàDepartment of Chemical, Pharmaceutical and Agricultural Sciences, University of Ferrara, via Fossato di Mortara 64/B, 44121, Ferrara, Italy.
Ottavia BonuccelliDepartment of Chemical, Pharmaceutical and Agricultural Sciences, University of Ferrara, via Fossato di Mortara 64/B, 44121, Ferrara, Italy.
Mattia BurattoDepartment of Chemical, Pharmaceutical and Agricultural Sciences, University of Ferrara, via Fossato di Mortara 64/B, 44121, Ferrara, Italy.
Riccardo FontanaDepartment of Chemical, Pharmaceutical and Agricultural Sciences, University of Ferrara, via Fossato di Mortara 64/B, 44121, Ferrara, Italy.
Mariaconcetta SicurellaDepartment of Environmental Sciences and Prevention, University of Ferrara, via L. Borsari 46, 44121, Ferrara, Italy.
Anna CaproniDepartment of Chemical, Pharmaceutical and Agricultural Sciences, University of Ferrara, via Fossato di Mortara 64/B, 44121, Ferrara, Italy.
Silvia FuselliDepartment of Life Sciences and Biotechnology, University of Ferrara, via L. Borsari 46, 44121, Ferrara, Italy.
Andrea BenazzoDepartment of Life Sciences and Biotechnology, University of Ferrara, via L. Borsari 46, 44121, Ferrara, Italy.
Roberto BertorelliNext Generation Sequencing Core Facility, Department of Cellular, Computational and Integrative Biology-CIBIO, University of Trento, via Sommarive 9, 38123, Povo, Trento, Italy.
Veronica De SanctisNext Generation Sequencing Core Facility, Department of Cellular, Computational and Integrative Biology-CIBIO, University of Trento, via Sommarive 9, 38123, Povo, Trento, Italy.
Paolo CavallerioNext Generation Sequencing Core Facility, Department of Cellular, Computational and Integrative Biology-CIBIO, University of Trento, via Sommarive 9, 38123, Povo, Trento, Italy.
Valentina SimioniDivision of Neurology, Department of Neuroscience and Rehabilitation, University Hospital of Ferrara, via A. Moro 8, 44100, Ferrara, Cona, Italy.
Valeria TugnoliDivision of Neurology, Department of Neuroscience and Rehabilitation, University Hospital of Ferrara, via A. Moro 8, 44100, Ferrara, Cona, Italy.
Francesca SalvatoriDepartment of Chemical, Pharmaceutical and Agricultural Sciences, University of Ferrara, via Fossato di Mortara 64/B, 44121, Ferrara, Italy. francesca.salvatori@unife.it.
Peggy MarconiDepartment of Chemical, Pharmaceutical and Agricultural Sciences, University of Ferrara, via Fossato di Mortara 64/B, 44121, Ferrara, Italy. peggy.marconi@unife.it.
University of Ferrara · ITUniversity of Trento · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SCAs are autosomal dominant neurodegenerative disorders caused by a gain-of-function protein with toxic activities, containing an expanded polyQ tract in the coding region. There are no treatments available to delay the onset, stop or slow down the progression of these pathologies. In this work we focus our attention on SCA1 which is one of the most common genotypes circulating in Italy. Here, we develop a CRISPR/Cas9-based approach to reduce both forms of the ATXN1 protein, normal and mutated with expanded polyQ. We started with the screening of 10 different sgRNAs able to target Exon 8 of the ATXN1 gene. The two most promising sgRNAs were validated in fibroblasts isolated from SCA1 patients, following the identification of the best transfection method for this type of cell. Our silencing approach significantly downregulated the expression of ataxin1, due to large deletions and the introduction of small changes in the ATXN1 gene, evidenced by NGS analysis, without major effects on cell viability. Furthermore, very few significant guide RNA-dependent off-target effects were observed. These preliminary results not only allowed us to identify the best transfection method for SCA1 fibroblasts, but strongly support CRISPR/Cas9 as a promising approach for the treatment of expanded polyQ diseases. Further investigations will be needed to verify the efficacy of our silencing system in SCA1 neurons and animal models.

Indexed as

Spinocerebellar AtaxiasAnimalsAtaxin-1CRISPR-Cas SystemsGain of Function MutationItalyAtaxin-1

Identifiers

PMID36434031
PMCPMC9700751
OpenAlexW4310057532

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.