Evidence map›Paper›PMID 36434007›Full record

ArticleNature communications2022

Defective activation and regulation of type I interferon immunity is associated with increasing COVID-19 severity.

Nikaïa Smith, Céline Possémé, Vincent Bondet, Jamie Sugrue, Liam Townsend, Bruno Charbit, Vincent Rouilly, Violaine Saint-André, Tom Dott, Andre Rodriguez Pozo and 13 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 62 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 5 institutions in 3 countries.

Nikaïa Smith *Translational Immunology Unit, Institut Pasteur, Université Paris Cité, Paris, France.ORCID 0000-0002-0202-612X
Céline Possémé *Translational Immunology Unit, Institut Pasteur, Université Paris Cité, Paris, France.
Vincent Bondet *Translational Immunology Unit, Institut Pasteur, Université Paris Cité, Paris, France.ORCID 0000-0002-6534-0984
Jamie SugrueSchool of Biochemistry and Medicine, Trinity Biomedical Sciences Institute, Trinity College Dublin, Dublin, Ireland.ORCID 0000-0001-7270-3838
Liam TownsendDiscipline of Clinical Medicine, School of Medicine, Trinity Translational Medicine Institute, Trinity College Dublin, Dublin, Ireland.ORCID 0000-0002-7089-0665
Bruno CharbitInstitut Pasteur, Université Paris Cité, CBUTechS, Center for Translational Research, Paris, France.ORCID 0000-0002-5478-482X
Vincent RouillyDatactix, Bordeaux, France.
Violaine Saint-AndréTranslational Immunology Unit, Institut Pasteur, Université Paris Cité, Paris, France.
Tom DottInstitut Pasteur, Université Paris Cité, CBUTechS, Center for Translational Research, Paris, France.
Andre Rodriguez PozoTranslational Immunology Unit, Institut Pasteur, Université Paris Cité, Paris, France.
Nader YatimTranslational Immunology Unit, Institut Pasteur, Université Paris Cité, Paris, France.
Olivier SchwartzDepartment of Virology, Virus and Immunity Unit, Institut Pasteur, Paris, France.ORCID 0000-0002-0729-1475
Minerva Cervantes-GonzalezInfectious and Tropical Diseases Department, AP-HP, Hôpital Bichat, Paris, France.
Jade GhosnInfectious and Tropical Diseases Department, AP-HP, Hôpital Bichat, Paris, France.
Paul BastardDepartment of Pediatrics, Necker Hospital for Sick Children, AP-HP, Paris, France.
Jean Laurent CasanovaDepartment of Pediatrics, Necker Hospital for Sick Children, AP-HP, Paris, France.
Tali-Anne SzwebelInstitut Cochin, APHP, Paris, France.
Benjamin TerrierInstitut Cochin, APHP, Paris, France.
Niall ConlonDepartment of Immunology, St James's Hospital, Dublin, Ireland.
Cliona O'FarrellySchool of Biochemistry and Medicine, Trinity Biomedical Sciences Institute, Trinity College Dublin, Dublin, Ireland.ORCID 0000-0002-0616-2874
Clíona Ní CheallaighDiscipline of Clinical Medicine, School of Medicine, Trinity Translational Medicine Institute, Trinity College Dublin, Dublin, Ireland.
Nollaig M BourkeDiscipline of Medical Gerontology, School of Medicine, Trinity Translational Medicine Institute, Trinity College Dublin, Dublin, Ireland.ORCID 0000-0003-4313-6859
Darragh DuffyTranslational Immunology Unit, Institut Pasteur, Université Paris Cité, Paris, France. darragh.duffy@pasteur.fr.ORCID 0000-0002-8875-2308
Institut Pasteur · FRTrinity College Dublin · IEInserm · FRAssistance Publique – Hôpitaux de Paris · FRHoward Hughes Medical Institute · US

Funding

TRANSFORMING TRANSLATIONAL SCIENCE AND EDUCATION TO BENEFIT HUMAN HEALTHUL1RR024143 · NCRR · ROCKEFELLER UNIVERSITY · PI COLLER, BARRY · 2006 to 2011
$49.1M
Monogenic basis of resistance to SARS-CoV2 and predisposition to severe COVID-19R01AI088364 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI Jean-Laurent Casanova, Shen-Ying Zhang · 2010 to 2026
$8.7M
Inborn errors of immunity in patients with life-threatening COVID-19R01AI163029 · NIAID · ROCKEFELLER UNIVERSITY · PI CASANOVA, JEAN-LAURENT, ZHANG, QIAN · 2021 to 2025
$3.7M
NCRR NIH HHS UL1 RR024143NIAID NIH HHS R01 AI088364NIAID NIH HHS R01 AI163029
6 · The paper itself

Abstract

Host immunity to infection with SARS-CoV-2 is highly variable, dictating diverse clinical outcomes ranging from asymptomatic to severe disease and death. We previously reported reduced type I interferon in severe COVID-19 patients preceded clinical worsening. Further studies identified genetic mutations in loci of the TLR3- or TLR7-dependent interferon-I pathways, or neutralizing interferon-I autoantibodies as risk factors for development of COVID-19 pneumonia. Here we show in patient cohorts with different severities of COVID-19, that baseline plasma interferon α measures differ according to the immunoassay used, timing of sampling, the interferon α subtype measured, and the presence of autoantibodies. We also show a consistently reduced induction of interferon-I proteins in hospitalized COVID-19 patients upon immune stimulation, that is not associated with detectable neutralizing autoantibodies against interferon α or interferon ω. Intracellular proteomic analysis shows increased monocyte numbers in hospitalized COVID-19 patients but impaired interferon-I response after stimulation. We confirm this by ex vivo whole blood stimulation with interferon-I which induces transcriptomic responses associated with inflammation in hospitalized COVID-19 patients, that is not seen in controls or non-hospitalized moderate cases. These results may explain the dichotomy of the poor clinical response to interferon-I based treatments in late stage COVID-19, despite the importance of interferon-I in early acute infection and may guide alternative therapeutic strategies.

Indexed as

COVID-19Interferon Type IAntiviral AgentsAutoantibodiesHumansInterferon-alphaProteomicsSARS-CoV-2Antiviral AgentsAutoantibodiesInterferon-alphaInterferon Type I

Identifiers

PMID36434007
PMCPMC9700809
OpenAlexW4310058921

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.