Evidence map›Paper›PMID 36433969›Full record

ArticleNature communications2022

Enhanced access to the human phosphoproteome with genetically encoded phosphothreonine.

Jack M Moen, Kyle Mohler, Svetlana Rogulina, Xiaojian Shi, Hongying Shen, Jesse Rinehart

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Human Synthetic Biology and Programmable Gene Regulation Control.Annual review of genomics and human genetics · 2025
    Review
  4. Biological Regulation StudiedAccounts of chemical research · 2025
    Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Biosynthesis, Engineering, and Delivery of Selenoproteins.International journal of molecular sciences · 2023
    Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Jack M MoenDepartment of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT, 06520, USA.ORCID 0000-0003-3112-667X
Kyle MohlerDepartment of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT, 06520, USA.ORCID 0000-0003-3072-7756
Svetlana RogulinaDepartment of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT, 06520, USA.
Xiaojian ShiDepartment of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT, 06520, USA.ORCID 0000-0001-7456-2901
Hongying ShenDepartment of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT, 06520, USA.ORCID 0000-0002-2115-7037
Jesse RinehartDepartment of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT, 06520, USA. jesse.rinehart@yale.edu.ORCID 0000-0003-4839-4005
Yale University · US

Funding

Expanding the genetic code with phosphotyrosine and phosphothreonineR01GM125951 · NIGMS · YALE UNIVERSITY · PI ISAACS, FARREN J., RINEHART, JESSE · 2018 to 2021
$1.2M
An integrated approach to the study of mitochondrial vitamin B12 pathway and type II fatty acid synthesisR00GM124296 · NIGMS · YALE UNIVERSITY · PI SHEN, HONGYING · 2020 to 2022
$747k
NIGMS NIH HHS R00 GM124296NIGMS NIH HHS R01 GM125951
6 · The paper itself

Abstract

Protein phosphorylation is a ubiquitous post-translational modification used to regulate cellular processes and proteome architecture by modulating protein-protein interactions. The identification of phosphorylation events through proteomic surveillance has dramatically outpaced our capacity for functional assignment using traditional strategies, which often require knowledge of the upstream kinase a priori. The development of phospho-amino-acid-specific orthogonal translation systems, evolutionarily divergent aminoacyl-tRNA synthetase and tRNA pairs that enable co-translational insertion of a phospho-amino acids, has rapidly improved our ability to assess the physiological function of phosphorylation by providing kinase-independent methods of phosphoprotein production. Despite this utility, broad deployment has been hindered by technical limitations and an inability to reconstruct complex phopho-regulatory networks. Here, we address these challenges by optimizing genetically encoded phosphothreonine translation to characterize phospho-dependent kinase activation mechanisms and, subsequently, develop a multi-level protein interaction platform to directly assess the overlap of kinase and phospho-binding protein substrate networks with phosphosite-level resolution.

Indexed as

Amino Acyl-tRNA SynthetasesProteomeHumansPhosphothreonineProteomicsRNA, TransferAmino Acyl-tRNA SynthetasesPhosphothreonineProteomeRNA, Transfer

Identifiers

PMID36433969
PMCPMC9700786
OpenAlexW4310061961

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.