Evidence map›Paper›PMID 36433940›Full record

ArticleNature communications2022

Integration of single-cell transcriptomes and biological function reveals distinct behavioral patterns in bone marrow endothelium.

Young-Woong Kim, Greta Zara, HyunJun Kang, Sergio Branciamore, Denis O'Meally, Yuxin Feng, Chia-Yi Kuan, Yingjun Luo, Michael S Nelson, Alex B Brummer and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
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  3. Review
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  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Young-Woong KimDepartment of Stem Cell Biology and Regenerative Medicine, Gehr Family Center for Leukemia Research, Beckman Research Institute, City of Hope, Duarte, CA, 91010, USA. ywkim@ibs.re.kr.ORCID 0000-0002-8450-7276
Greta ZaraDepartment of Stem Cell Biology and Regenerative Medicine, Gehr Family Center for Leukemia Research, Beckman Research Institute, City of Hope, Duarte, CA, 91010, USA.
HyunJun KangDepartment of Stem Cell Biology and Regenerative Medicine, Gehr Family Center for Leukemia Research, Beckman Research Institute, City of Hope, Duarte, CA, 91010, USA.
Sergio BranciamoreDepartment of Computational and Quantitative Medicine, Division of Mathematical Oncology, Beckman Research Institute, City of Hope, Duarte, CA, 91010, USA.
Denis O'MeallyCenter for Gene Therapy, Beckman Research Institute, City of Hope, Duarte, CA, 91010, USA.ORCID 0000-0001-7749-9506
Yuxin FengDivision of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA.
Chia-Yi KuanDepartment of Neuroscience, Center for Brain Immunology and Glia (BIG), University of Virginia School of Medicine, Charlottesville, VA, 22908, USA.
Yingjun LuoDepartment of Diabetes Complications and Metabolism, Beckman Research Institute, City of Hope, Duarte, CA, 91010, USA.ORCID 0000-0003-2271-3725
Michael S NelsonLight Microscopy Core, Beckman Research Institute, City of Hope, Duarte, CA, 91010, USA.ORCID 0000-0003-0480-5597
Alex B BrummerDepartment of Computational and Quantitative Medicine, Division of Mathematical Oncology, Beckman Research Institute, City of Hope, Duarte, CA, 91010, USA.
Russell RockneDepartment of Computational and Quantitative Medicine, Division of Mathematical Oncology, Beckman Research Institute, City of Hope, Duarte, CA, 91010, USA.ORCID 0000-0002-1557-159X
Zhen Bouman ChenDepartment of Diabetes Complications and Metabolism, Beckman Research Institute, City of Hope, Duarte, CA, 91010, USA.ORCID 0000-0002-3291-1090
Yi ZhengDivision of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA.
Angelo A CardosoCenter for Gene Therapy, Beckman Research Institute, City of Hope, Duarte, CA, 91010, USA.
Nadia CarlessoDepartment of Stem Cell Biology and Regenerative Medicine, Gehr Family Center for Leukemia Research, Beckman Research Institute, City of Hope, Duarte, CA, 91010, USA. ncarlesso@coh.org.ORCID 0000-0002-5131-9885
City of Hope · USCincinnati Children's Hospital Medical Center · USCollege of Charleston · USInstitute for Basic Science · KRUniversity of Virginia · US

Funding

Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI John Charles Williams · 1985 to 2026
$86.3M
CMRO2 and Uncoupling of Oxidative-Phosphorylation in Experimental HIER01NS125677 · NINDS · UNIVERSITY OF VIRGINIA · PI Song Hu, Chia-Yi Kuan · 2022 to 2026
$2.8M
Long non-coding RNA-mediated chromatin remodeling in angiogenesisR01HL145170 · NHLBI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI CHEN, ZHEN BOUMAN · 2019 to 2023
$2.6M
Creatine Transporter Deficiency and Brain EnergeticsR01NS108763 · NINDS · UNIVERSITY OF VIRGINIA · PI KUAN, CHIA-YI · 2018 to 2022
$2.3M
Neutrophils and Monocytes in Pediatric Ischemic StrokeR01NS125788 · NINDS · UNIVERSITY OF VIRGINIA · PI Chia-Yi Kuan · 2022 to 2026
$2.1M
Inflammation as determinant of clonal selection in MPN progressionR01HL141379 · NHLBI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI CARLESSO, NADIA · 2018 to 2021
$2.1M
Physiologic Regulation of Hematopoiesis by NotchR01DK097837 · NIDDK · INDIANA UNIVERSITY INDIANAPOLIS · PI CARLESSO, NADIA · 2014 to 2017
$1.6M
Perivascular Fibroblast-Endothelium Interactions in Hypertension and Cerebral IschemiaR21NS127392 · NINDS · UNIVERSITY OF VIRGINIA · PI KUAN, CHIA-YI · 2022 to 2023
$444k
NCI NIH HHS P30 CA033572NHLBI NIH HHS R01 HL141379NHLBI NIH HHS R01 HL145170NIDDK NIH HHS R01 DK097837NINDS NIH HHS R01 NS108763NINDS NIH HHS R01 NS125677NINDS NIH HHS R01 NS125788NINDS NIH HHS R21 NS127392
6 · The paper itself

Abstract

Heterogeneity of endothelial cell (EC) populations reflects their diverse functions in maintaining tissue's homeostasis. However, their phenotypic, molecular, and functional properties are not entirely mapped. We use the Tie2-CreERT2;Rosa26-tdTomato reporter mouse to trace, profile, and cultivate primary ECs from different organs. As paradigm platform, we use this strategy to study bone marrow endothelial cells (BMECs). Single-cell mRNA sequencing of primary BMECs reveals that their diversity and native molecular signatures is transitorily preserved in an ex vivo culture that conserves key cell-to-cell microenvironment interactions. Macrophages sustain BMEC cellular diversity and expansion and preserve sinusoidal-like BMECs ex vivo. Endomucin expression discriminates BMECs in populations exhibiting mutually exclusive properties and distinct sinusoidal/arterial and tip/stalk signatures. In contrast to arterial-like, sinusoidal-like BMECs are short-lived, form 2D-networks, contribute to in vivo angiogenesis, and support hematopoietic stem/progenitor cells in vitro. This platform can be extended to other organs' ECs to decode mechanistic information and explore therapeutics.

Indexed as

Bone MarrowEndothelial CellsAnimalsEndotheliumHematopoietic Stem CellsMiceTranscriptome

Identifiers

PMID36433940
PMCPMC9700769
OpenAlexW4310058926

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.