Evidence map›Paper›PMID 36429007›Full record

ArticleCells2022

Method for the Isolation of "RNA-seq-Quality" RNA from Human Intervertebral Discs after Mortar and Pestle Homogenization.

Artemii A Ivanov, Olga N Leonova, Daniil S Wiebe, Alexsandr V Krutko, Mariya M Gridina, Veniamin S Fishman, Yurii S Aulchenko, Yakov A Tsepilov, Tatiana S Golubeva

Abstract read
In one paragraph

Article in Cells, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Artemii A IvanovInstitute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia.ORCID 0000-0002-4761-8276
Olga N LeonovaInstitute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia.
Daniil S WiebeInstitute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia.ORCID 0000-0002-0175-1127
Alexsandr V KrutkoInstitute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia.
Mariya M GridinaInstitute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia.
Veniamin S FishmanInstitute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia.ORCID 0000-0002-5573-3100
Yurii S AulchenkoInstitute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia.
Yakov A TsepilovInstitute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia.ORCID 0000-0002-4931-6052
Tatiana S GolubevaInstitute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia.ORCID 0000-0002-4400-0665

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The problem of isolating high-quality total RNA from intervertebral discs has no recognized solution yet. This is due to the extremely low content of live cells in the samples and the voluminous intercellular matrix. A variety of published protocols focused on isolating RNA from articular cartilage have recommended the use of expensive equipment, enzymatic matrix cleavage, or cell culture. In our study, we used a combination of the traditional QIAzol protocol (Qiagen, Germany) and RNEasy column purification (Qiagen, Germany) to obtain high-quality RNA from post-surgical intervertebral disc fragments. Only a mortar and a pestle were used for grinding, making our method particularly accessible. The isolated RNA with a RIN of ~7 is suitable for studying the expression profile of chondrocytes in situ. RNA-seq analysis of three samples demonstrated cell type ratios to be mostly relevant to intervertebral disc tissues, with over 70% of the chondrocytes of the three subtypes having an admixture of blood-related cells.

Indexed as

Cartilage, ArticularIntervertebral DiscChondrocytesHumansRNARNA-SeqRNAcartilage RNA isolationintervertebral discRINRNA-seq

Identifiers

PMID36429007
PMCPMC9688557

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.