Evidence map›Paper›PMID 36428893›Full record

ArticleDiagnostics (Basel, Switzerland)2022

Fluorescence-Linked Aptamer Assay for SARS-CoV-2 Spike-Protein: A Step-by-Step Performance Analysis in Clinical Samples.

Pablo Alberto Franco-Urquijo, Mónica Sierra-Martínez, Mariana Jarquín-Martínez, Mateo Alejandro Martínez-Roque, Victor Miguel García-Velásquez, Gustavo Acosta-Altamirano, Nancy Jannet Ruiz-Pérez, Julia Dolores Toscano-Garibay, Luis Marat Alvarez-Salas

Abstract read
In one paragraph

Article in Diagnostics (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Pablo Alberto Franco-UrquijoLaboratorio de Terapia Génica, Departamento de Genética y Biología Molecular, Centro de Investigación y de Estudios Avanzados del IPN, Mexico City 07360, Mexico.
Mónica Sierra-MartínezUnidad de Investigación en Salud, Hospital Regional de Alta Especialidad de Ixtapaluca, Ixtapaluca 56530, Mexico.
Mariana Jarquín-MartínezUnidad de Investigación en Salud, Hospital Regional de Alta Especialidad de Ixtapaluca, Ixtapaluca 56530, Mexico.
Mateo Alejandro Martínez-RoqueLaboratorio de Terapia Génica, Departamento de Genética y Biología Molecular, Centro de Investigación y de Estudios Avanzados del IPN, Mexico City 07360, Mexico.ORCID 0000-0002-5193-1337
Victor Miguel García-VelásquezLaboratorio de Terapia Génica, Departamento de Genética y Biología Molecular, Centro de Investigación y de Estudios Avanzados del IPN, Mexico City 07360, Mexico.
Gustavo Acosta-AltamiranoHospital Regional de Alta Especialidad de Ixtapaluca, Ixtapaluca 56530, Mexico.
Nancy Jannet Ruiz-PérezIndependent Researcher, Mexico City 07800, Mexico.
Julia Dolores Toscano-GaribayUnidad de Desarrollo en Soluciones Diagnósticas, Hospital Regional de Alta Especialidad de Ixtapaluca, Ixtapaluca 56530, Mexico.ORCID 0000-0001-5858-2814
Luis Marat Alvarez-SalasLaboratorio de Terapia Génica, Departamento de Genética y Biología Molecular, Centro de Investigación y de Estudios Avanzados del IPN, Mexico City 07360, Mexico.ORCID 0000-0002-3646-3723

Funding

Agencia Mexicana de Colaboración Internacional para el Desarrollo 2020-6
6 · The paper itself

Abstract

The COVID-19 pandemic has been a main concern over the last two years and has become one of the most important crises in the history of human health. Today, there is still a need for affordable and reliable diagnostic tests for massive disease monitoring. Previously, a set of highly specific DNA-aptamers (C7/C9) binding to the SARS-CoV-2 Spike (S) protein were isolated but its performance in clinical samples remained to be tested. Here, 242 samples were collected through three different methods and subjected to florescence-linked aptamer assays (FLAA) based on C7/C9 aptamers through two readout protocols. Then, a step-by-step statistical approach which included agreement tests, proportion comparisons and binomial and multinomial logistic regressions was used to predict optimal conditions for the novel C7/C9 FLAA test. RTqPCR threshold cycles, symptoms onset and processing time were influential factors on FLAA test results. Naturally occurring mutations on S were also detected and analyzed. Aminoacidic substitutions D614G and T732A appeared relevant for aptamer recognition although further studies are necessary. The methodology presented here is the first step to determine the performance and diagnosis across a range of clinical contexts and it might serve as a base for a complete analysis applicable to other designs of new diagnostic tests.

Indexed as

aptamerCOVID-19diagnostic testFLAASARS-CoV-2spike protein

Identifiers

PMID36428893
PMCPMC9689637

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.