Evidence map›Paper›PMID 36428696›Full record

ArticleCancers2022

Multi-Omics Alleviates the Limitations of Panel Sequencing for Cancer Drug Response Prediction.

Artem Baranovskii, Irem B Gündüz, Vedran Franke, Bora Uyar, Altuna Akalin

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Artem BaranovskiiNon-Coding RNAs and Mechanisms of Cytoplasmic Gene Regulation Lab, Berlin Institute for Medical Systems Biology, Max Delbrück Center (MDC) for Molecular Medicine, Hannoversche Str. 28, 10115 Berlin, Germany.ORCID 0000-0001-7217-3881
Irem B GündüzIntegrative Cellular Biology & Bioinformatics Lab, Saarland University, 66123 Saarbrücken, Germany.ORCID 0000-0003-2641-0916
Vedran FrankeMax Delbrück Center (MDC) for Molecular Medicine, Bioinformatics and Omics Data Science Platform, The Berlin Institute for Medical Systems Biology, Hannoversche Str. 28, 10115 Berlin, Germany.ORCID 0000-0003-3606-6792
Bora UyarMax Delbrück Center (MDC) for Molecular Medicine, Bioinformatics and Omics Data Science Platform, The Berlin Institute for Medical Systems Biology, Hannoversche Str. 28, 10115 Berlin, Germany.ORCID 0000-0002-3170-4890
Altuna AkalinMax Delbrück Center (MDC) for Molecular Medicine, Bioinformatics and Omics Data Science Platform, The Berlin Institute for Medical Systems Biology, Hannoversche Str. 28, 10115 Berlin, Germany.ORCID 0000-0002-0468-0117
Max Delbrück Center · DESaarland University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Comprehensive genomic profiling using cancer gene panels has been shown to improve treatment options for a variety of cancer types. However, genomic aberrations detected via such gene panels do not necessarily serve as strong predictors of drug sensitivity. In this study, using pharmacogenomics datasets of cell lines, patient-derived xenografts, and ex vivo treated fresh tumor specimens, we demonstrate that utilizing the transcriptome on top of gene panel features substantially improves drug response prediction performance in cancer.

Indexed as

cancerdrug response predictionmulti-omicspanel sequencingpharmacogenomics

Identifiers

PMID36428696
PMCPMC9688044
OpenAlexW4309316237

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.