Evidence map›Paper›PMID 36428691›Full record

ArticleCancers2022

Interaction of Arsenic Exposure and Transcriptomic Profile in Basal Cell Carcinoma.

Muhammad G Kibriya, Farzana Jasmine, Aaron Munoz, Tariqul Islam, Alauddin Ahmed, Lin Tong, Muhammad Rakibuz-Zaman, Mohammad Shahriar, Mohammed Kamal, Christopher R Shea and 3 more

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Muhammad G KibriyaInstitute for Population and Precision Health, Biological Sciences Division, University of Chicago Medicine, Chicago, IL 60637, USA.ORCID 0000-0001-9784-6958
Farzana JasmineInstitute for Population and Precision Health, Biological Sciences Division, University of Chicago Medicine, Chicago, IL 60637, USA.
Aaron MunozInstitute for Population and Precision Health, Biological Sciences Division, University of Chicago Medicine, Chicago, IL 60637, USA.
Tariqul IslamUChicago Research Bangladesh (URB), University of Chicago, Dhaka 1230, Bangladesh.
Alauddin AhmedUChicago Research Bangladesh (URB), University of Chicago, Dhaka 1230, Bangladesh.
Lin TongInstitute for Population and Precision Health, Biological Sciences Division, University of Chicago Medicine, Chicago, IL 60637, USA.
Muhammad Rakibuz-ZamanPulse Infoframe, London, ON N5X 4E7, Canada.
Mohammad ShahriarInstitute for Population and Precision Health, Biological Sciences Division, University of Chicago Medicine, Chicago, IL 60637, USA.
Mohammed KamalDepartment of Pathology, The Laboratory, Dhaka 1205, Bangladesh.
Christopher R SheaSection of Dermatology, Department of Medicine, University of Chicago, Chicago, IL 60637, USA.
Joseph H GrazianoDepartment of Environmental Health Science, Mailman School of Public Health, Columbia University, New York, NY 10032, USA.
Maria ArgosDivision of Epidemiology & Biostatistics, School of Public Health, University of Illinois Chicago, Chicago, IL 60612, USA.ORCID 0000-0003-4234-252X
Habibul AhsanInstitute for Population and Precision Health, Biological Sciences Division, University of Chicago Medicine, Chicago, IL 60637, USA.
University of Chicago · USUniversity of Chicago Research Bangladesh · BDColumbia University · USUniversity of Illinois Chicago · US

Funding

Chemoprevention of arsenic-induced skin cancerR01CA107431 · NCI · UNIVERSITY OF CHICAGO · PI AHSAN, HABIBUL · 2005 to 2014
$17.3M
Pilot Program CoreP30ES027792 · NIEHS · UNIVERSITY OF CHICAGO · PI Gokhan M. Mutlu, Gail S Prins · 2017 to 2026
$13.6M
NIEHS NIH HHS P30 ES027792NIH HHS P30ES027792NIH HHS R01CA107431
6 · The paper itself

Abstract

Exposure to inorganic arsenic (As) is recognized as risk factor for basal cell carcinoma (BCC). We have followed-up 7000 adults for 6 years who were exposed to As and had manifest As skin toxicity. Of them, 1.7% developed BCC (males = 2.2%, females = 1.3%). In this study, we compared transcriptome-wide RNA sequencing data from the very first 26 BCC cases and healthy skin tissue from independent 16 individuals. Genes in “ cell carcinoma pathway”, “Hedgehog signaling pathway”, and “Notch signaling pathway” were overexpressed in BCC, confirming the findings from earlier studies in BCC in other populations known to be exposed to As. However, we found that the overexpression of these known pathways was less pronounced in patients with high As exposure (urinary As creatinine ratio (UACR) > 192 µg/gm creatinine) than patients with low UACR. We also found that high UACR was associated with impaired DNA replication pathway, cellular response to different DNA damage repair mechanisms, and immune response. Transcriptomic data were not strongly suggestive of great potential for immune checkpoint inhibitors; however, it suggested lower chance of platinum drug resistance in BCC patients with high UACR compared high platinum drug resistance potential in patients with lower UACR.

Indexed as

ArsenicBasal Cell CarcinomaDNA damageDNA replication pathwayGene environment interactionGene expressionHedgehog signalingNotch signalingPlatinum drug resistance

Identifiers

PMID36428691
PMCPMC9688807
OpenAlexW4309211565

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.