Evidence map›Paper›PMID 36428558›Full record

ArticleBiomedicines2022

An Adapted Deep Convolutional Neural Network for Automatic Measurement of Pancreatic Fat and Pancreatic Volume in Clinical Multi-Protocol Magnetic Resonance Images: A Retrospective Study with Multi-Ethnic External Validation.

John Zhiyong Yang, Jichao Zhao, Reza Nemati, Xavier Yin, Kevin Haokun He, Lindsay Plank, Rinki Murphy, Jun Lu

Open access · goldAbstract read
In one paragraph

Article in Biomedicines, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 6 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Differential Diagnostic Value of Machine Learning-Based Models for Embolic Stroke.Clinical and applied thrombosis/hemostasis : official journal of the International Academy of Clinical and Applied Thrombosis/Hemostasis
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

John Zhiyong YangSchool of Science, Faculty of Health and Environmental Sciences, Auckland University of Technology, Auckland 1010, New Zealand.ORCID 0000-0002-7046-675X
Jichao ZhaoAuckland Bioengineering Institute, University of Auckland, Auckland 1142, New Zealand.
Reza NematiCanterbury Health Laboratories, Canterbury District Health Board, Christchurch 8022, New Zealand.
Xavier YinDepartment of Electrical Engineering and Computer Sciences, The University of California, Berkeley, CA 94720, USA.
Kevin Haokun HeSchool of Engineering and Applied Science, University of Pennsylvania, Philadelphia, PA 19104, USA.
Lindsay PlankSchool of Medicine, Faculty of Medical and Health Sciences, University of Auckland, Auckland 1142, New Zealand.ORCID 0000-0003-2737-0151
Rinki MurphySchool of Medicine, Faculty of Medical and Health Sciences, University of Auckland, Auckland 1142, New Zealand.ORCID 0000-0002-0043-2423
Jun LuSchool of Science, Faculty of Health and Environmental Sciences, Auckland University of Technology, Auckland 1010, New Zealand.ORCID 0000-0003-0225-6643
University of Auckland · NZCanterbury Health Laboratories · NZNanchang University · CNUniversity of California, Berkeley · USUniversity of Pennsylvania · US

Funding

Health Research Council of New Zealand 16/481Maurice Wilkins Centre 2705733/13294-MWC327
6 · The paper itself

Abstract

Pancreatic volume and fat fraction are critical prognoses for metabolic diseases like type 2 diabetes (T2D). Magnetic Resonance Imaging (MRI) is a required non-invasive quantification method for the pancreatic fat fraction. The dramatic development of deep learning has enabled the automatic measurement of MR images. Therefore, based on MRI, we intend to develop a deep convolutional neural network (DCNN) that can accurately segment and measure pancreatic volume and fat fraction. This retrospective study involved abdominal MR images from 148 diabetic patients and 246 healthy normoglycemic participants. We randomly separated them into training and testing sets according to the proportion of 80:20. There were 2364 recognizable pancreas images labeled and pre-treated by an upgraded superpixel algorithm for a discernible pancreatic boundary. We then applied them to the novel DCNN model, mimicking the most accurate and latest manual pancreatic segmentation process. Fat phantom and erosion algorithms were employed to increase the accuracy. The results were evaluated by dice similarity coefficient (DSC). External validation datasets included 240 MR images from 10 additional patients. We assessed the pancreas and pancreatic fat volume using the DCNN and compared them with those of specialists. This DCNN employed the cutting-edge idea of manual pancreas segmentation and achieved the highest DSC (91.2%) compared with any reported models. It is the first framework to measure intra-pancreatic fat volume and fat deposition. Performance validation reflected by regression R

Indexed as

deep convolutional neural network (DCNN)diabetes prognosismachine learningorgan fat measurementpancreas segmentation

Identifiers

PMID36428558
PMCPMC9687882
OpenAlexW4309705291

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.