Evidence map›Paper›PMID 36427086›Full record

ArticleCancer immunology, immunotherapy : CII2023

Identification of TCR rearrangements specific for genetic alterations in EGFR-mutated non-small cell lung cancer: results from the ADJUVANT-CTONG1104 trial.

Cunte Chen, Siyang Maggie Liu, Yedan Chen, Qiuxiang Ou, Hua Bao, Ling Xu, Yikai Zhang, Jia-Tao Zhang, Wenzhao Zhong, Qing Zhou and 5 more

Open access · greenAbstract read
In one paragraph

Article in Cancer immunology, immunotherapy : CII, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 3 countries.

Cunte Chen *Key Laboratory for Regenerative Medicine of Ministry of Education, Institute of Hematology, School of Medicine, Jinan University, Guangzhou, 510632, China.ORCID http://orcid.org/0000-0003-3733-9174
Siyang Maggie Liu *Key Laboratory for Regenerative Medicine of Ministry of Education, Institute of Hematology, School of Medicine, Jinan University, Guangzhou, 510632, China.ORCID http://orcid.org/0000-0002-3837-0758
Yedan ChenGeneseeq Research Institute, Nanjing Geneseeq Technology Inc., Nanjing, 210032, China.ORCID http://orcid.org/0000-0002-7942-5540
Qiuxiang OuGeneseeq Research Institute, Nanjing Geneseeq Technology Inc., Nanjing, 210032, China.ORCID http://orcid.org/0000-0002-2961-2057
Hua BaoGeneseeq Research Institute, Nanjing Geneseeq Technology Inc., Nanjing, 210032, China.ORCID http://orcid.org/0000-0001-5774-8755
Ling XuKey Laboratory for Regenerative Medicine of Ministry of Education, Institute of Hematology, School of Medicine, Jinan University, Guangzhou, 510632, China.ORCID http://orcid.org/0000-0002-7044-7663
Yikai ZhangKey Laboratory for Regenerative Medicine of Ministry of Education, Institute of Hematology, School of Medicine, Jinan University, Guangzhou, 510632, China.ORCID http://orcid.org/0000-0002-6851-6260
Jia-Tao ZhangGuangdong Provincial Key Laboratory of Translational Medicine in Lung Cancer, Guangdong Lung Cancer Institute, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, Guangzhou, 510080, China.ORCID http://orcid.org/0000-0003-4302-9332
Wenzhao ZhongGuangdong Provincial Key Laboratory of Translational Medicine in Lung Cancer, Guangdong Lung Cancer Institute, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, Guangzhou, 510080, China.ORCID http://orcid.org/0000-0002-4000-6402
Qing ZhouGuangdong Provincial Key Laboratory of Translational Medicine in Lung Cancer, Guangdong Lung Cancer Institute, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, Guangzhou, 510080, China.ORCID http://orcid.org/0000-0002-0478-176X
Xue-Ning YangGuangdong Provincial Key Laboratory of Translational Medicine in Lung Cancer, Guangdong Lung Cancer Institute, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, Guangzhou, 510080, China.ORCID http://orcid.org/0000-0002-8346-2117
Yang ShaoGeneseeq Research Institute, Nanjing Geneseeq Technology Inc., Nanjing, 210032, China.ORCID http://orcid.org/0000-0003-4585-1792
Yi-Long WuGuangdong Provincial Key Laboratory of Translational Medicine in Lung Cancer, Guangdong Lung Cancer Institute, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, Guangzhou, 510080, China. syylwu@live.cn.ORCID http://orcid.org/0000-0002-3611-0258
Si-Yang LiuGuangdong Provincial Key Laboratory of Translational Medicine in Lung Cancer, Guangdong Lung Cancer Institute, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, Guangzhou, 510080, China. momogogogo@126.com.ORCID http://orcid.org/0000-0002-5105-6421
Yangqiu LiKey Laboratory for Regenerative Medicine of Ministry of Education, Institute of Hematology, School of Medicine, Jinan University, Guangzhou, 510632, China. yangqiuli@hotmail.com.ORCID http://orcid.org/0000-0002-0974-4036
Guangdong Academy of Medical Sciences · CNJinan University · CNGenesee Community College · USGuangzhou University of Chinese Medicine · CNNanjing Medical University · CN

Funding

China Postdoctoral Science Foundation 2021M701422Guangdong Provincial Applied Science and Technology Research and Development Program 2016B020237006Guangdong Provincial Key Laboratory of Lung Cancer Translational Medicine 2017B030314120National Natural Science Foundation of China 82002413
6 · The paper itself

Abstract

Tumor response T cells, which have specific T cell receptor (TCR) rearrangements in tumor-infiltrating lymphocytes, determine their ability to interact with the mutation-derived neoantigens presented by antigen-presenting cells. Little is known about the genetic alterations related to specific TCR clones in non-small cell lung cancer (NSCLC) patients who have an epidermal growth factor receptor (EGFR) mutation. In this study, tumor tissues were collected from 101 patients with stage II/III resectable NSCLC with an EGFR mutation (57 patients were treated with gefitinib and 44 were treated with chemotherapy) in the ADJUVANT-CTONG1104 trial for high-throughput TCRβ V region and exome sequencing. Ten clonal TCRs were associated with EGFR exon 19 deletion (del), EGFR exon 21 mutation (L858R), RB1 alteration, TP53 exon 4/5 missense mutation, TP53 nonsense mutation, or copy number gains in NKX2-1 and CDK4. Among the TCRs, there was frequent use of Vβ20-1Jβ2-3 specifically for EGFR exon 19 del or Vβ9Jβ2-1 specifically for EGFR exon 21 mutation (L858R), and these were significantly associated with favorable overall survival (OS) for NSCLC patients harboring EGFR exon 19 del or exon 21 L858R, particularly in the adjuvant gefitinib setting. Moreover, in comparison with the chemotherapy-preferable (CP) group, higher frequencies of Vβ20-1Jβ2-3 and Vβ9Jβ2-1 were found in the highly TKI-preferable (HTP) or TKI-preferable (TP) groups. Altogether, we identified ten TCR rearrangements specific for genetic alterations in NSCLC. Importantly, high abundance Vβ20-1Jβ2-3 or Vβ9Jβ2-1 may be an immune biomarker for guiding adjuvant gefitinib decisions for NSCLC patients harboring EGFR exon 19 del or EGFR exon 21 L858R.

Indexed as

Carcinoma, Non-Small-Cell LungLung NeoplasmsErbB ReceptorsGefitinibHumansMutationProtein Kinase InhibitorsReceptors, Antigen, T-CellEGFR protein, humanErbB ReceptorsGefitinibProtein Kinase InhibitorsReceptors, Antigen, T-CellAdjuvant therapyEGFRGene mutationNon-small cell lung cancerPrognosisTCR rearrangement

Identifiers

PMID36427086
PMCPMC10992609
OpenAlexW4309941284

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.