Evidence map›Paper›PMID 36424390›Full record

ArticleScientific reports2022

Community succession and functional prediction of microbial consortium with straw degradation during subculture at low temperature.

Xin Zhang, Qinggeer Borjigin, Ju-Lin Gao, Xiao-Fang Yu, Shu-Ping Hu, Bi-Zhou Zhang, Sheng-Cai Han

Abstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xin Zhang *Agricultural College, Inner Mongolia Agricultural University, No. 275, XinJian East Street, Hohhot, 010019, China.
Qinggeer Borjigin *Agricultural College, Inner Mongolia Agricultural University, No. 275, XinJian East Street, Hohhot, 010019, China.
Ju-Lin GaoAgricultural College, Inner Mongolia Agricultural University, No. 275, XinJian East Street, Hohhot, 010019, China. nmgaojulin@163.com.
Xiao-Fang YuAgricultural College, Inner Mongolia Agricultural University, No. 275, XinJian East Street, Hohhot, 010019, China. yuxiaofang75@163.com.
Shu-Ping HuKey Laboratory of Crop Cultivation and Genetic Improvement in Inner Mongolia Autonomous Region, No. 275, XinJian East Street, Hohhot, 010019, China.
Bi-Zhou ZhangSpecial Crops Institute, Inner Mongolia Academy of Agricultural Animal Husbandry Sciences, No. 22, ZhaoJun Road, Hohhot, 010031, China.
Sheng-Cai HanKey Laboratory of Crop Cultivation and Genetic Improvement in Inner Mongolia Autonomous Region, No. 275, XinJian East Street, Hohhot, 010019, China.

Funding

Crop Science Observation and Experiment Station in Loess Plateau of North China of Ministry of Agriculture 25204120Inner Mongolia Natural Foundation 2018ZD02Inner Mongolia Natural Foundation 2020MS03086National Natural Science Foundation of China 31760353National Natural Science Foundation of China 32060434The China Agriculture Research System of MOF and MARA CARS-02-63The Science and Technology Xingmeng Project KJXM2020001-06
6 · The paper itself

Abstract

To systematically explore and analyze the microbial composition and function of microbial consortium M44 with straw degradation in the process of subculture at low temperature. In this study, straw degradation characteristics of samples in different culture stages were determined. MiSeq high-throughput sequencing technology was used to analyze the evolution of community structure and its relationship with degradation characteristics of microbial consortium in different culture periods, and the PICRUSt function prediction analysis was performed. The results showed that straw degradation rate, endoglucanase activity, and filter paper enzyme activity of M44 generally decreased with increasing culture algebra. The activities of xylanase, laccase, and lignin peroxidase, as well as VFA content, showing a single-peak curve change with first an increase and then decrease. In the process of subculture, Proteobacteria, Bacteroidetes, and Firmicutes were dominant in different culture stages. Pseudomonas, Flavobacterium, Devosia, Brevundimonas, Trichococcus, Acinetobacter, Dysgonomonas, and Rhizobium were functional bacteria in different culture stages. It was found by PICRUSt function prediction that the functions were concentrated in amino acid transport and metabolism, carbohydrate transship and metabolism related genes, which may contain a large number of fibers and lignin degrading enzyme genes. In this study, the microbial community succession and the gene function in different culture periods were clarified and provide a theoretical basis for screening and rational utilization of microbial consortia.

Indexed as

Microbial ConsortiaMicrobiotaBacteriaLigninTemperatureLignin

Identifiers

PMID36424390
PMCPMC9691720

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.