Evidence map›Paper›PMID 36423864›Full record

ArticleClinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases2023

Timing and genotype distribution of symptomatic and asymptomatic sapovirus infections and re-infections in a Nicaraguan birth cohort.

Fredman González, Marta Diez-Valcarce, Yaoska Reyes, Nadja A Vielot, Christian Toval-Ruíz, Lester Gutiérrez, Omar Zepeda, Edwing Centeno Cuadra, Patricia Blandón, Hannah Browne and 5 more

Open access · greenAbstract read
In one paragraph

Article in Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Fredman GonzálezDepartment of Microbiology, National Autonomous University of Nicaragua - León, León, Nicaragua.
Marta Diez-ValcarceDivision of Viral Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA; Rollins School of Public Health, Emory University, Atlanta, GA, USA.
Yaoska ReyesDepartment of Microbiology, National Autonomous University of Nicaragua - León, León, Nicaragua.
Nadja A VielotDepartment of Family Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Christian Toval-RuízDepartment of Microbiology, National Autonomous University of Nicaragua - León, León, Nicaragua.
Lester GutiérrezDepartment of Microbiology, National Autonomous University of Nicaragua - León, León, Nicaragua.
Omar ZepedaDepartment of Microbiology, National Autonomous University of Nicaragua - León, León, Nicaragua.
Edwing Centeno CuadraDepartment of Microbiology, National Autonomous University of Nicaragua - León, León, Nicaragua.
Patricia BlandónDepartment of Microbiology, National Autonomous University of Nicaragua - León, León, Nicaragua.
Hannah BrowneNational Foundation for the Centers for Disease Control and Prevention Inc., Atlanta, GA, USA.
Natalie M BowmanDepartment of Family Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Samuel VílchezDepartment of Microbiology, National Autonomous University of Nicaragua - León, León, Nicaragua.
Jan VinjéRollins School of Public Health, Emory University, Atlanta, GA, USA.
Sylvia Becker-DrepsDepartment of Family Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Filemón BucardoDepartment of Microbiology, National Autonomous University of Nicaragua - León, León, Nicaragua. Electronic address: fili_bucardo@hotmail.com.
Universidad Nacional Autónoma de Nicaragua-León · NIUniversity of North Carolina at Chapel Hill · USEmory University · USThe Centers · US

Funding

Natural history, immunity, and transmission patterns of sapovirus in a Nicaraguan birth cohortR01AI127845 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BECKER-DREPS, SYLVIA IRENE, VINJE, JAN · 2016 to 2020
$3.5M
Understanding protection against norovirus at the maternal-child interfaceK24AI141744 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Sylvia Irene Becker-Dreps · 2019 to 2026
$1.4M
Nicaraguan Emerging and Endemic Diseases (NEED) Training ProgramD43TW010923 · FIC · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BECKER-DREPS, SYLVIA IRENE · 2018 to 2023
$1.4M
Preliminary Effectiveness Analysis of Universal Rotavirus Immunization, NicaraguaK01TW008401 · FIC · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BECKER-DREPS, SYLVIA IRENE · 2009 to 2012
$507k
FIC NIH HHS D43 TW010923FIC NIH HHS K01 TW008401Intramural CDC HHS CC999999NIAID NIH HHS K24 AI141744NIAID NIH HHS R01 AI127845
6 · The paper itself

Abstract

objectivesTo characterize the timing and genotype distribution of symptomatic and asymptomatic sapovirus infections and re-infections in a Nicaraguan birth cohort.

methodsInfants (N = 444) were enrolled at 10-14 days of life and observed weekly until 2 years of age. Stool samples were collected for each acute gastroenteritis (AGE) episode, and routine stool samples were collected monthly. Stool samples were tested for sapovirus using RT-qPCR, and positive samples were genotyped.

resultsA total of 348 children completed 2 years of AGE weekly surveillance; 93 (26.7%) of them experienced sapovirus AGE. Most infections occurred after 5 months of age and mainly during the second year of life (62.4%, 58/93) and early in the rainy season. Sapovirus screening in all stools from a subset of 67 children who consistently provided samples showed sapovirus infections in 91 of 330 (27.6%) AGE episodes and in 39 of 1350 (2.9%) routine stools. In this subset, the median age at the first sapovirus AGE was 11.2 months (95% CI, 9.3-15.9 months); 38 of 67 (57%) children experienced re-infections, 19 symptomatic and 19 asymptomatic. On average, sapovirus re-infections were reported 7.2 months after symptomatic and 5.3 months after asymptomatic infections. Genogroup GI (64%, 69/108) was the most common detected. Sapovirus GI.1 was more frequently detected in AGE stool samples than in routine stool samples (47.2%, 43/91 vs. 25.6%, 10/39; p 0.005), and re-infection with the same genotype was uncommon. DISCUSSION: The first sapovirus infections occurred at approximately 11 months of age, whereas the median time to symptomatic re-infection was 7.2 months. Re-infections with the same sapovirus genotype were rare during 2 years of life suggesting genotype-specific protection after natural infection.

Indexed as

Caliciviridae InfectionsSapovirusAsymptomatic InfectionsBirth CohortChildFecesGenotypeHumansInfantPhylogenyReinfectionBirth cohortGenotype distributionNatural protectionRe-infectionSapovirusTiming of infection

Identifiers

PMID36423864
PMCPMC10077563
OpenAlexW4309532035

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.