Evidence map›Paper›PMID 36423114›Full record

ArticleViruses2022

Modulation of HERV Expression by Four Different Encephalitic Arboviruses during Infection of Human Primary Astrocytes.

Fernando Luz de Castro, Otávio José Bernandes Brustolini, Victor Emmanuel Viana Geddes, Jorge Paes Barreto Marcondes de Souza, Soniza Vieira Alves-Leon, Renato Santana Aguiar, Ana Tereza Ribeiro Vasconcelos

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

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  6. Microorganisms · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Fernando Luz de CastroD'Or Institute for Research and Education (IDOR), Rio de Janeiro 22281-100, Brazil.
Otávio José Bernandes BrustoliniBioinformatics Lab, National Laboratory for Scientific Computing (LNCC), Petrópolis 25651-076, Brazil.
Victor Emmanuel Viana GeddesIntegrative Biology Lab, Department of Genetics, Ecology and Evolution, Institute of Biological Sciences, Federal University of Minas Gerais (UFMG), Belo Horizonte 31270-901, Brazil.
Jorge Paes Barreto Marcondes de SouzaService of Neurosurgery, Department of Surgery, University Hospital Clementino Fraga Filho, Federal University of Rio de Janeiro (UFRJ), Rio de Janeiro 21941-617, Brazil.
Soniza Vieira Alves-LeonLaboratory of Translational Neurosciences (LABNET/UNIRIO), Federal University of the State of Rio de Janeiro, Rio de Janeiro 20270-004, Brazil.ORCID 0000-0002-1538-6730
Renato Santana AguiarD'Or Institute for Research and Education (IDOR), Rio de Janeiro 22281-100, Brazil.ORCID 0000-0001-5180-3717
Ana Tereza Ribeiro VasconcelosBioinformatics Lab, National Laboratory for Scientific Computing (LNCC), Petrópolis 25651-076, Brazil.ORCID 0000-0002-4632-2086
Laboratório Nacional de Computação Científica · BRUniversidade Federal de Minas Gerais · BRD’Or Institute for Research and Education · BRUniversidade Federal do Estado do Rio de Janeiro · BRUniversidade Federal do Rio de Janeiro · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human retroelements (HERVs) are retroviral origin sequences fixed in the human genome. HERVs induction is associated with neurogenesis, cellular development, immune activation, and neurological disorders. Arboviruses are often associated with the development of encephalitis. The interplay between these viruses and HERVs has not been fully elucidated. In this work, we analyzed RNAseq data derived from infected human primary astrocytes by Zika (ZikV), Mayaro (MayV), Oropouche (OroV) and Chikungunya (ChikV) viruses, and evaluated the modulation of HERVs and their nearby genes. Our data show common HERVs expression modulation by both alphaviruses, suggesting conserved evolutionary routes of transcription regulation. A total of 15 HERVs were co-modulated by the four arboviruses, including the highly upregulated HERV4_4q22. Data on the upregulation of genes nearby to these elements in ChikV, MayV and OroV infections were also obtained, and interaction networks were built. The upregulation of 14 genes common among all viruses was observed in the networks, and 93 genes between MayV and ChikV. These genes are related to cellular processes such as cellular replication, cytoskeleton, cell vesicle traffic and antiviral response. Together, our results support the role of HERVs induction in the transcription regulation process of genes during arboviral infections.

Indexed as

ArbovirusesChikungunya FeverChikungunya virusEncephalitisEndogenous RetrovirusesZika VirusZika Virus InfectionAstrocytesHumansarbovirusesastrocyteshuman endogenous retroviruses

Identifiers

PMID36423114
PMCPMC9694637
OpenAlexW4309008719

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.