Evidence map›Paper›PMID 36421395›Full record

ArticleBiology2022

Estuarine Aquacultures at the Crossroads of Animal Production and Antibacterial Resistance: A Metagenomic Approach to the Resistome.

Daniel G Silva, Célia P F Domingues, João F Figueiredo, Francisco Dionisio, Ana Botelho, Teresa Nogueira

Open access · goldAbstract read
In one paragraph

Article in Biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Daniel G SilvaINIAV-National Institute for Agrarian and Veterinary Research, IP, 2780-157 Oeiras, Portugal.ORCID 0000-0001-8973-5190
Célia P F DominguesINIAV-National Institute for Agrarian and Veterinary Research, IP, 2780-157 Oeiras, Portugal.ORCID 0000-0003-2970-010X
João F FigueiredoINIAV-National Institute for Agrarian and Veterinary Research, IP, 2780-157 Oeiras, Portugal.
Francisco DionisiocE3c-Center for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, 1749-016 Lisbon, Portugal.ORCID 0000-0002-3653-1511
Ana BotelhoINIAV-National Institute for Agrarian and Veterinary Research, IP, 2780-157 Oeiras, Portugal.ORCID 0000-0002-1843-9455
Teresa NogueiraINIAV-National Institute for Agrarian and Veterinary Research, IP, 2780-157 Oeiras, Portugal.ORCID 0000-0002-0059-5177
University of Lisbon · PTInstituto Nacional de Investigação Agrária e Veterinária · PT

Funding

Fundação para a Ciência e Tecnologia ALG-01-0145-FEDER-028824Fundação para a Ciência e Tecnologia UI/BD/153078/2022
6 · The paper itself

Abstract

It is recognized that the spread of antibiotic resistance (AR) genes among aquatic environments, including aquaculture and the human environment, can have detrimental effects on human and animal health and the ecosystem. Thus, when transmitted to the human microbiome or pathogens, resistance genes risk human health by compromising the eventual treatment of infections with antibiotic therapy. This study aimed to define the resistance profile of aquaculture farms and their potential risk for spreading. Twenty-four sediments from oyster and gilthead sea bream aquaculture farms located in three Portuguese river estuaries (17 sediments from Sado, 4 from Aveiro, and 3 from Lima) were studied by comparative metagenomic analysis. The computation of the diversity of genes conferring resistance per antibiotic class revealed a significant increase in aminoglycosides, beta-lactams, disinfectants, quinolones, and tetracyclines counts. In all geographic locations under study, the most diverse AR genes confer resistance to the macrolides, tetracyclines and oxazolidinones classes, all of which are medically important for human and animal therapies, as well as resistance to disinfectants. The diversity of mobile genetic elements correlated with the number of AR genes such as tetracyclines, suggesting that AR could be easily mobilized among bacterial genomes and microbiomes.

Indexed as

aquaculture farmsmetagenomicsmobile genetic elementsresistance fingerprintresistome

Identifiers

PMID36421395
PMCPMC9687122
OpenAlexW4309786409

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.