Evidence map›Paper›PMID 36420889›Full record

ArticleNucleic acids research2023

DNA Data Bank of Japan (DDBJ) update report 2022.

Yasuhiro Tanizawa, Takatomo Fujisawa, Yuichi Kodama, Takehide Kosuge, Jun Mashima, Tomoya Tanjo, Yasukazu Nakamura

Abstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. An integrated culturomic and genomic database and analysis platform for methanogenic archaea.Database : the journal of biological databases and curation · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Visualizing metagenomic and metatranscriptomic data: A comprehensive review.Computational and structural biotechnology journal · 2024
    Review
  7. Influenza sequence validation and annotation using VADR.Database : the journal of biological databases and curation · 2024
    Article
  8. GenBase: A Nucleotide Sequence Database.Genomics, proteomics & bioinformatics · 2024
    Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Influenza sequence validation and annotation using VADR.bioRxiv : the preprint server for biology · 2024
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yasuhiro TanizawaBioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.ORCID 0000-0002-6294-3309
Takatomo FujisawaBioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Yuichi KodamaBioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.ORCID 0000-0001-7691-9812
Takehide KosugeBioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Jun MashimaBioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.ORCID 0000-0003-4138-1893
Tomoya TanjoBioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Yasukazu NakamuraBioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.ORCID 0000-0002-6782-5715

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Bioinformation and DNA Data Bank of Japan (DDBJ) Center (https://www.ddbj.nig.ac.jp) maintains database archives that cover a wide range of fields in life sciences. As a founding member of the International Nucleotide Sequence Database Collaboration (INSDC), our primary mission is to collect and distribute nucleotide sequence data, as well as their study and sample information, in collaboration with the National Center for Biotechnology Information in the United States and the European Bioinformatics Institute. In addition to INSDC resources, the Center operates databases for functional genomics (GEA: Genomic Expression Archive), metabolomics (MetaboBank), and human genetic and phenotypic data (JGA: Japanese Genotype-Phenotype Archive). These databases are built on the supercomputer of the National Institute of Genetics, whose remaining computational capacity is actively utilized by domestic researchers for large-scale biological data analyses. Here, we report our recent updates and the activities of our services.

Indexed as

Databases, Nucleic AcidGenomicsBase SequenceComputational BiologyComputersHumansInternetJapanUnited States

Identifiers

PMID36420889
PMCPMC9825463

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.