ArticleFrontiers in genetics2022
Genome-wide association study, haplotype analysis, and genomic prediction reveal the genetic basis of yield-related traits in soybean (
Article in Frontiers in genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed.
- Uncovering superior alleles and genetic loci for yield-related traits in mungbean (Vigna radiata L. Wilczek) through a genome-wide association study.BMC plant biology · 2026Article
- Dissection of local haplotype diversity at soybean rust loci reveals resistance-associated and context-dependent variation patterns in diverse germplasm.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Haplotype-based genome-wide association study uncovers QTL for fruit-related traits in the 287 tomato accessions.BMC plant biology · 2026Article
- Integrative machine learning approach for identifying genes associated with quantitative traits: A soybean (Glycine max) yield case study.The plant genome · 2026Article
- Local Haplotyping Analysis for Flowering Time in Soybean Using Crosshap.Methods in molecular biology (Clifton, N.J.) · 2026Article
- Integrative haplotype and SNP-based GWAS supports the identification of stable genomic loci controlling yield-related traits in soybean.Frontiers in plant science · 2026Article
- Genome-wide association studies and candidate gene identification under salinity stress in bread wheat (Frontiers in plant science · 2026Article
- Pod Dehiscence in Soybean: Genome Wide Association Study and Genomic Prediction.Plants (Basel, Switzerland) · 2025Article
- Identification of new genomic loci for seed protein and oil content in the soybean pangenome using genome-wide association and haplotype analyses.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Dissecting the genetic and phenotypic basis of salinity tolerance in mungbean: insights from multi-stage phenotyping, GWAS and genomic prediction.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Integrative Approaches to Soybean Resilience, Productivity, and Utility: A Review of Genomics, Computational Modeling, and Economic Viability.Plants (Basel, Switzerland) · 2025Review
- GWAS analysis revealed genomic loci and candidate genes associated with the 100-seed weight in high-latitude-adapted soybean germplasm.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Identification of superior haplotypes and candidate gene for seed size-related traits in soybean (Molecular breeding : new strategies in plant improvement · 2025Article
- Identification of candidate genes and development of KASP markers for soybean pod-related traits using GWAS.Frontiers in plant science · 2025Article
- Deep short-read sequences facilitated identification of seven putative drought tolerance genes in a genome-wide association study in soybean.Frontiers in plant science · 2025Article
- Unveiling key genetic determinants of charcoal rot resistance in soybean via genome-wide association studies.Frontiers in plant science · 2025Article
- Local haplotyping reveals insights into the genetic control of flowering time variation in wild and domesticated soybean.The plant genome · 2024Article
- Identification of superior and rare haplotypes to optimize branch number in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Genome-wide association studies reveal novel QTLs for agronomic traits in soybean.Frontiers in plant science · 2024Article
- Soybean genetics, genomics, and breeding for improving nutritional value and reducing antinutritional traits in food and feed.The plant genome · 2023Review
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7 authors.
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Abstract
Identifying the genetic components underlying yield-related traits in soybean is crucial for improving its production and productivity. Here, 211 soybean genotypes were evaluated across six environments for four yield-related traits, including seed yield per plant (SYP), number of pods per plant number of seeds per plant and 100-seed weight (HSW). Genome-wide association study (GWAS) and genomic prediction (GP) analyses were performed using 12,617 single nucleotide polymorphism markers from NJAU 355K SoySNP Array. A total of 57 SNPs were significantly associated with four traits across six environments and a combined environment using five Genome-wide association study models. Out of these, six significant SNPs were consistently identified in more than three environments using multiple GWAS models. The genomic regions (±670 kb) flanking these six consistent SNPs were considered stable QTL regions. Gene annotation and in silico expression analysis revealed 15 putative genes underlying the stable QTLs that might regulate soybean yield. Haplotype analysis using six significant SNPs revealed various allelic combinations regulating diverse phenotypes for the studied traits. Furthermore, the GP analysis revealed that accurate breeding values for the studied soybean traits is attainable at an earlier generation. Our study paved the way for increasing soybean yield performance within a short breeding cycle.
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