Evidence map›Paper›PMID 36418347›Full record

ArticleNature communications2022

High-precision estimation of emitter positions using Bayesian grouping of localizations.

Mohamadreza Fazel, Michael J Wester, David J Schodt, Sebastian Restrepo Cruz, Sebastian Strauss, Florian Schueder, Thomas Schlichthaerle, Jennifer M Gillette, Diane S Lidke, Bernd Rieger and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Re-establishment of TAD boundary organization during DNA replication.bioRxiv : the preprint server for biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Mohamadreza FazelDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, NM, USA.
Michael J WesterDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, NM, USA.ORCID 0000-0002-3520-7605
David J SchodtDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, NM, USA.ORCID 0000-0002-8986-2736
Sebastian Restrepo CruzDepartment of Pathology, University of New Mexico Health Science Center, Albuquerque, NM, USA.
Sebastian StraussDepartment of Physics and Center for Nanoscience, Ludwig Maximilian University, Munich, Germany.ORCID 0000-0002-4653-1451
Florian SchuederDepartment of Physics and Center for Nanoscience, Ludwig Maximilian University, Munich, Germany.
Thomas SchlichthaerleDepartment of Physics and Center for Nanoscience, Ludwig Maximilian University, Munich, Germany.
Jennifer M GilletteDepartment of Pathology, University of New Mexico Health Science Center, Albuquerque, NM, USA.
Diane S LidkeDepartment of Pathology, University of New Mexico Health Science Center, Albuquerque, NM, USA.
Bernd RiegerDepartment of Imaging Physics, Delft University of Technology, Delft, the Netherlands.ORCID 0000-0001-9215-9307
Ralf JungmannDepartment of Physics and Center for Nanoscience, Ludwig Maximilian University, Munich, Germany.ORCID 0000-0003-4607-3312
Keith A LidkeDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, NM, USA. klidke@unm.edu.ORCID 0000-0002-9328-4318

Funding

WOMEN'S CANCERS RESEARCH PROGRAMP30CA118100 · NCI · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Yolanda Sanchez · 2005 to 2026
$57.1M
UNM TRAININGP50GM085273 · NIGMS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI LIDKE, KEITH A · 2009 to 2018
$26.1M
Functional Role of Tetraspanin CD82 in Hematopoietic Stem Cell InteractionsR01HL122483 · NHLBI · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Jennifer Gillette · 2015 to 2026
$4.2M
Imaging the Early Events in Membrane Receptor SignalingR35GM126934 · NIGMS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Diane Lidke · 2018 to 2026
$3.1M
Multi-target super-resolution imaging using sequential labelingR21EB019589 · NIBIB · UNIVERSITY OF NEW MEXICO · PI LIDKE, KEITH A · 2015 to 2016
$390k
NCI NIH HHS P30 CA118100NHLBI NIH HHS R01 HL122483NIBIB NIH HHS R21 EB019589NIGMS NIH HHS P50 GM085273NIGMS NIH HHS R35 GM126934
6 · The paper itself

Abstract

Single-molecule localization microscopy super-resolution methods rely on stochastic blinking/binding events, which often occur multiple times from each emitter over the course of data acquisition. Typically, the blinking/binding events from each emitter are treated as independent events, without an attempt to assign them to a particular emitter. Here, we describe a Bayesian method of inferring the positions of the tagged molecules by exploring the possible grouping and combination of localizations from multiple blinking/binding events. The results are position estimates of the tagged molecules that have improved localization precision and facilitate nanoscale structural insights. The Bayesian framework uses the localization precisions to learn the statistical distribution of the number of blinking/binding events per emitter and infer the number and position of emitters. We demonstrate the method on a range of synthetic data with various emitter densities, DNA origami constructs and biological structures using DNA-PAINT and dSTORM data. We show that under some experimental conditions it is possible to achieve sub-nanometer precision.

Indexed as

LearningBayes TheoremSingle Molecule Imaging

Identifiers

PMID36418347
PMCPMC9684143

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.