Evidence map›Paper›PMID 36418314›Full record

ArticleNature communications2022

Smc5/6's multifaceted DNA binding capacities stabilize branched DNA structures.

Jeremy T-H Chang, Shibai Li, Emily C Beckwitt, Thane Than, Cory Haluska, Joshua Chandanani, Michael E O'Donnell, Xiaolan Zhao, Shixin Liu

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Allelic Analysis ofInternational journal of molecular sciences · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Multifaceted roles of SUMO in DNA metabolism.Nucleus (Austin, Tex.) · 2024
    Review
  11. Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Molecular basis for Nse5-6 mediated regulation of Smc5/6 functions.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  18. Article
  19. Genome control by SMC complexes.Nature reviews. Molecular cell biology · 2023
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Jeremy T-H Chang *Laboratory of Nanoscale Biophysics and Biochemistry, The Rockefeller University, New York, NY, 10065, USA.ORCID 0000-0002-2680-4934
Shibai Li *Molecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Emily C BeckwittLaboratory of DNA Replication, Howard Hughes Medical Institute, The Rockefeller University, New York, NY, 10065, USA.
Thane ThanMolecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Cory HaluskaMolecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.ORCID 0000-0002-0399-1749
Joshua ChandananiLaboratory of Nanoscale Biophysics and Biochemistry, The Rockefeller University, New York, NY, 10065, USA.
Michael E O'DonnellLaboratory of DNA Replication, Howard Hughes Medical Institute, The Rockefeller University, New York, NY, 10065, USA.ORCID 0000-0001-9002-4214
Xiaolan ZhaoTri-Institutional MD-PhD Program, The Rockefeller University, Weill Cornell Medical College, and Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA. zhaox1@mskcc.org.ORCID 0000-0002-8302-6905
Shixin LiuLaboratory of Nanoscale Biophysics and Biochemistry, The Rockefeller University, New York, NY, 10065, USA. shixinliu@rockefeller.edu.ORCID 0000-0003-4238-7066
Memorial Sloan Kettering Cancer Center · USHoward Hughes Medical Institute · USRockefeller University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Weill Cornell/Rockefeller/Sloan-Kettering MST ProgramT32GM007739 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HSU, KATHARINE C · 1985 to 2023
$51.1M
Regulation of genome replication, recombination, and stress responseR35GM145260 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI Xiaolan Zhao · 2022 to 2026
$3.6M
Biochemical Mechanism and Structure of the Eukaryotic Replication ForkR01GM115809 · NIGMS · ROCKEFELLER UNIVERSITY · PI O'DONNELL, MICHAEL E · 2015 to 2022
$2.6M
Probing Symmetry Breaking in Epigenetic Inheritance: From Single Molecules to Systems BiologyDP2HG010510 · NHGRI · ROCKEFELLER UNIVERSITY · PI LIU, SHIXIN · 2018 to 2018
$2.5M
Single-molecule dissection of a tumor- and virus-suppressing Smc complex involved in genome maintenanceF30CA275379 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI CHANG, JEREMY TZU-HUAI · 2022 to 2025
$213k
NCI NIH HHS F30 CA275379NCI NIH HHS P30 CA008748NHGRI NIH HHS DP2 HG010510NIGMS NIH HHS R01 GM115809NIGMS NIH HHS R35 GM145260NIGMS NIH HHS T32 GM007739
6 · The paper itself

Abstract

Smc5/6 is an evolutionarily conserved SMC complex with roles in DNA replication and repair, as well as in viral DNA restriction. Understanding its multiple functions has been hampered by a lack of mechanistic studies on how the Smc5/6 complex associates with different types of DNA. Here we address this question by simultaneously visualizing the behavior of Smc5/6 on three types of DNA, namely double-stranded (ds) DNA, single-stranded (ss) DNA, and junction DNA formed by juxtaposed ss- and dsDNA, using correlative single-molecule fluorescence and force microscopy. We find that Smc5/6 displays distinct behaviors toward different types of DNA, dynamically associating with dsDNA while stably binding to junction DNA. Mechanistically, both the Nse1-3-4 subcomplex and ATP binding enhance the complex's dsDNA association. In contrast, Smc5/6's assembly onto ssDNA emanating from junction DNA, which occurs even in the presence high-affinity ssDNA binders, is aided by Nse1-3-4, but not by ATP. Moreover, we show that Smc5/6 protects junction DNA stability by preventing ssDNA annealing. The multifaceted DNA association behaviors of Smc5/6 provide a framework for understanding its diverse functions in genome maintenance and viral DNA restriction.

Indexed as

Cell Cycle ProteinsDNA, ViralAdenosine TriphosphateDNA ReplicationDNA, Single-StrandedAdenosine TriphosphateCell Cycle ProteinsDNA, Single-StrandedDNA, Viral

Identifiers

PMID36418314
PMCPMC9684126
OpenAlexW4309865497

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.