Evidence map›Paper›PMID 36418310›Full record

ArticleNature communications2022

Structure- and computational-aided engineering of an oxidase to produce isoeugenol from a lignin-derived compound.

Yiming Guo, Laura Alvigini, Milos Trajkovic, Lur Alonso-Cotchico, Emanuele Monza, Simone Savino, Ivana Marić, Andrea Mattevi, Marco W Fraaije

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 39 citations in OpenAlex.

  1. A one-pot organocatalytic process for the synthesis of cyclic carbonates from COGreen chemistry : an international journal and green chemistry resource : GC · 2026
    Article
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  11. Engineering Enzymes for Environmental Sustainability.Angewandte Chemie (International ed. in English) · 2023
    Review
  12. Engineering Enzymes for Environmental Sustainability.Angewandte Chemie (Weinheim an der Bergstrasse, Germany) · 2023
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Yiming GuoMolecular Enzymology Group, University of Groningen, Groningen, the Netherlands.ORCID 0000-0002-6941-3589
Laura AlviginiDepartment of Biology and Biotechnology "Lazzaro Spallanzani", University of Pavia, Pavia, Italy.
Milos TrajkovicMolecular Enzymology Group, University of Groningen, Groningen, the Netherlands.ORCID 0000-0001-7264-1630
Lur Alonso-CotchicoZymvol Biomodeling S.L., Barcelona, Spain.
Emanuele MonzaZymvol Biomodeling S.L., Barcelona, Spain.
Simone SavinoMolecular Enzymology Group, University of Groningen, Groningen, the Netherlands.ORCID 0000-0001-9505-3348
Ivana MarićMolecular Enzymology Group, University of Groningen, Groningen, the Netherlands.
Andrea MatteviDepartment of Biology and Biotechnology "Lazzaro Spallanzani", University of Pavia, Pavia, Italy.ORCID 0000-0002-9523-7128
Marco W FraaijeMolecular Enzymology Group, University of Groningen, Groningen, the Netherlands. m.w.fraaije@rug.nl.ORCID 0000-0001-6346-5014
University of Groningen · NLUniversity of Pavia · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Various 4-alkylphenols can be easily obtained through reductive catalytic fractionation of lignocellulosic biomass. Selective dehydrogenation of 4-n-propylguaiacol results in the formation of isoeugenol, a valuable flavor and fragrance molecule and versatile precursor compound. Here we present the engineering of a bacterial eugenol oxidase to catalyze this reaction. Five mutations, identified from computational predictions, are first introduced to render the enzyme more thermostable. Other mutations are then added and analyzed to enhance chemoselectivity and activity. Structural insight demonstrates that the slow catalytic activity of an otherwise promising enzyme variant is due the formation of a slowly-decaying covalent substrate-flavin cofactor adduct that can be remedied by targeted residue changes. The final engineered variant comprises eight mutations, is thermostable, displays good activity and acts as a highly chemoselective 4-n-propylguaiacol oxidase. We lastly use our engineered biocatalyst in an illustrative preparative reaction at gram-scale. Our findings show that a natural enzyme can be redesigned into a tailored biocatalyst capable of valorizing lignin-based monophenols.

Indexed as

LigninOxidoreductasesEugenolHydrolasesEugenolHydrolasesisoeugenolLigninOxidoreductases

Identifiers

PMID36418310
PMCPMC9684555
OpenAlexW4309923849

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.