Evidence map›Paper›PMID 36417524›Full record

ArticleScience advances2022

Adaptive duplication and genetic diversification of protein kinase R contribute to the specificity of bat-virus interactions.

Stéphanie Jacquet, Michelle Culbertson, Chi Zhang, Adil El Filali, Clément De La Myre Mory, Jean-Baptiste Pons, Ondine Filippi-Codaccioni, M Elise Lauterbur, Barthélémy Ngoubangoye, Jeanne Duhayer and 11 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Extensive longevity and DNA virus-driven adaptation in nearcticbioRxiv : the preprint server for biology · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. The evolution of aging and lifespan.Trends in genetics : TIG · 2023
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 7 institutions in 3 countries.

Stéphanie JacquetLaboratoire de Biométrie et Biologie Evolutive (LBBE), UMR 5558, UCBL1, CNRS, Lyon, France.ORCID 0000-0003-4606-4934
Michelle CulbertsonDepartment of Human Genetics, University of Utah, Salt Lake City, UT 84112, USA.ORCID 0000-0002-5057-178X
Chi ZhangDepartment of Medical Microbiology and Immunology, School of Medicine, University of California Davis, Davis, CA 95616, USA.ORCID 0000-0003-2494-6901
Adil El FilaliLaboratoire de Biométrie et Biologie Evolutive (LBBE), UMR 5558, UCBL1, CNRS, Lyon, France.ORCID 0000-0001-5183-0010
Clément De La Myre MoryCIRI, Centre International de Recherche en Infectiologie, Univ Lyon, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, UMR5308, ENS de Lyon, F-69007 Lyon, France.ORCID 0000-0003-4302-1365
Jean-Baptiste PonsLaboratoire de Biométrie et Biologie Evolutive (LBBE), UMR 5558, UCBL1, CNRS, Lyon, France.
Ondine Filippi-CodaccioniLaboratoire de Biométrie et Biologie Evolutive (LBBE), UMR 5558, UCBL1, CNRS, Lyon, France.
M Elise LauterburDepartment of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA.ORCID 0000-0002-7362-3618
Barthélémy NgoubangoyeInternational Centre of Medical Research of Franceville, Primatology Centre, Franceville, Gabon.ORCID 0000-0002-0868-3868
Jeanne DuhayerLaboratoire de Biométrie et Biologie Evolutive (LBBE), UMR 5558, UCBL1, CNRS, Lyon, France.
Clément VerezCIRI, Centre International de Recherche en Infectiologie, Univ Lyon, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, UMR5308, ENS de Lyon, F-69007 Lyon, France.
Chorong ParkDepartment of Medical Microbiology and Immunology, School of Medicine, University of California Davis, Davis, CA 95616, USA.ORCID 0000-0001-5751-5767
Clara DahouiCIRI, Centre International de Recherche en Infectiologie, Univ Lyon, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, UMR5308, ENS de Lyon, F-69007 Lyon, France.
Clayton M CareyDepartment of Human Genetics, University of Utah, Salt Lake City, UT 84112, USA.
Greg BrennanDepartment of Medical Microbiology and Immunology, School of Medicine, University of California Davis, Davis, CA 95616, USA.ORCID 0000-0002-4339-9045
David EnardDepartment of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA.ORCID 0000-0003-2634-8016
Andrea CimarelliCIRI, Centre International de Recherche en Infectiologie, Univ Lyon, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, UMR5308, ENS de Lyon, F-69007 Lyon, France.ORCID 0000-0003-0892-0488
Stefan RothenburgDepartment of Medical Microbiology and Immunology, School of Medicine, University of California Davis, Davis, CA 95616, USA.ORCID 0000-0002-2525-8230
Nels C EldeDepartment of Human Genetics, University of Utah, Salt Lake City, UT 84112, USA.ORCID 0000-0002-0426-1377
Dominique PontierLaboratoire de Biométrie et Biologie Evolutive (LBBE), UMR 5558, UCBL1, CNRS, Lyon, France.ORCID 0000-0003-4700-3543
Lucie EtienneCIRI, Centre International de Recherche en Infectiologie, Univ Lyon, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, UMR5308, ENS de Lyon, F-69007 Lyon, France.ORCID 0000-0002-8585-7534
Université Claude Bernard Lyon 1 · FRUniversity of California, Davis · USUniversity of Arizona · USUniversity of Utah · USCentre International de Recherches Médicales de Franceville · GAHoward Hughes Medical Institute · USNorthwestern University · US

Funding

Importance of Species-Specific Interactions of PKR with Poxvirus Inhibitors for Virus Replication and Host RangeR01AI114851 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI ROTHENBURG, STEFAN · 2015 to 2019
$1.8M
Evolutionary innovations from host-microbe interactionsR35GM134936 · NIGMS · UNIVERSITY OF UTAH · PI ELDE, NELS C. · 2020 to 2024
$1.7M
Diarrheal pathogens and the evolution of intestinal signalingF30GM146410 · NIGMS · UNIVERSITY OF UTAH · PI CULBERTSON, MICHELLE · 2022 to 2024
$134k
NIAID NIH HHS R01 AI114851NIGMS NIH HHS F30 GM146410NIGMS NIH HHS R35 GM134936
6 · The paper itself

Abstract

Several bat species act as asymptomatic reservoirs for many viruses that are highly pathogenic in other mammals. Here, we have characterized the functional diversification of the protein kinase R (PKR), a major antiviral innate defense system. Our data indicate that PKR has evolved under positive selection and has undergone repeated genomic duplications in bats in contrast to all studied mammals that have a single copy of the gene. Functional testing of the relationship between PKR and poxvirus antagonists revealed how an evolutionary conflict with ancient pathogenic poxviruses has shaped a specific bat host-virus interface. We determined that duplicated PKRs of the

Identifiers

PMID36417524
PMCPMC9683710
OpenAlexW4309987752

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.