Evidence map›Paper›PMID 36415827›Full record

ArticleNAR genomics and bioinformatics2022

Mapping separase-mediated cleavage in situ.

Abdelhalim Boukaba, Qiongfang Wu, Jian Liu, Cheng Chen, Jierong Liang, Jingjing Li, Alexander V Strunnikov

Open access · goldAbstract read
In one paragraph

Article in NAR genomics and bioinformatics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 88% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 0 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Abdelhalim BoukabaMolecular Epigenetics Laboratory, Guangzhou Institutes of Biomedicine and Health, Guangzhou, Guangdong, 510530, China.
Qiongfang WuMolecular Epigenetics Laboratory, Guangzhou Institutes of Biomedicine and Health, Guangzhou, Guangdong, 510530, China.
Jian LiuMolecular Epigenetics Laboratory, Guangzhou Institutes of Biomedicine and Health, Guangzhou, Guangdong, 510530, China.
Cheng ChenMolecular Epigenetics Laboratory, Guangzhou Institutes of Biomedicine and Health, Guangzhou, Guangdong, 510530, China.
Jierong LiangMolecular Epigenetics Laboratory, Guangzhou Institutes of Biomedicine and Health, Guangzhou, Guangdong, 510530, China.
Jingjing LiMolecular Epigenetics Laboratory, Guangzhou Institutes of Biomedicine and Health, Guangzhou, Guangdong, 510530, China.
Alexander V StrunnikovMolecular Epigenetics Laboratory, Guangzhou Institutes of Biomedicine and Health, Guangzhou, Guangdong, 510530, China.ORCID https://orcid.org/0000-0002-9058-2256
Guangzhou Institutes of Biomedicine and Health · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Separase is a protease that performs critical functions in the maintenance of genetic homeostasis. Among them, the cleavage of the meiotic cohesin during meiosis is a key step in producing gametes in eukaryotes. However, the exact chromosomal localization of this proteolytic cleavage was not addressed due to the lack of experimental tools. To this end, we developed a method based on monoclonal antibodies capable of recognizing the predicted neo-epitopes produced by separase-mediated proteolysis in the RAD21 and REC8 cohesin subunits. To validate the epigenomic strategy of mapping cohesin proteolysis, anti-RAD21 neo-epitopes antibodies were used in ChIP-On-ChEPseq analysis of human cells undergoing mitotic anaphase. Second, a similar analysis applied for mapping of REC8 cleavage in germline cells in Macaque showed a correlation with a subset of alpha-satellites and other repeats, directly demonstrating that the site-specific mei-cohesin proteolysis hotspots are coincident but not identical with centromeres. The sequences for the corresponding immunoglobulin genes show a convergence of antibodies with close specificity. This approach could be potentially used to investigate cohesin ring opening events in other chromosomal locations, if applied to single cells.

Identifiers

PMID36415827
PMCPMC9673495
OpenAlexW4309378296

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.