Evidence map›Paper›PMID 36415462›Full record

ArticleResearch square2022

Large libraries of single-chain trimer peptide-MHCs enable rapid antigen-specific CD8+ T cell discovery and analysis.

James Heath, William Chour, Jongchan Choi, Jingyi Xie, Mary Chaffee, Thomas Schmitt, Kathryn Finton, Diana Delucia, Alexander Xu, Yapeng Su and 15 more

Open access · greenAbstract readPreprint
In one paragraph

Article in Research square, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors at 5 institutions in 4 countries.

James HeathInstitute for Systems Biology.ORCID 0000-0001-5356-4385
William ChourInstitute for Systems Biology.
Jongchan ChoiInstitute for Systems Biology.
Jingyi XieInstitute for Systems Biology.
Mary ChaffeeFred Hutch Cancer Research Center.
Thomas SchmittFred Hutch Cancer Research Center.
Kathryn FintonFred Hutch Cancer Research Center.
Diana DeluciaFred Hutch Cancer Research Center.ORCID 0000-0002-1165-6799
Alexander XuFred Hutch Cancer Research Center.ORCID 0000-0003-4877-4358
Yapeng SuInstitute for Systems Biology, Seattle, WA 98109, USA.
Daniel ChenInstitute for Systems Biology, Seattle, WA 98109, USA.ORCID 0000-0001-6660-6257
Rongyu ZhangInstitute for Systems Biology.
Dan YuanInstitute for Systems Biology.
Sunga HongInstitute for Systems Biology.ORCID 0000-0003-4412-2811
Alphonsus NgInstitute for Systems Biology.
Jonah ButlerFred Hutch Cancer Research Center.
Rick EdmarkInstitute for Systems Biology.
Lesley JonesInstitute for Systems Biology.
Kim MurrayInstitute for Systems Biology.
Songming Peng
Guideng LiCalifornia Institute of Technology.
Roland StrongFred Hutch Cancer Research Institute.
John LeeFred Hutchinson Cancer Center.ORCID 0000-0002-6570-2180
Jason GoldmanSwedish Medical Center.ORCID 0000-0002-3825-6832
Philip GreenbergFred Hutch Cancer Research Institute.ORCID 0000-0003-3812-647X
Institute for Systems Biology · USFred Hutch Cancer Center · USBarro Colorado Island · PACalifornia Institute of Technology · USCape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZA

Funding

Nano and biomolecular engineered technologies for neoantigen-specific T cell capture and characterizationR01CA264090 · NCI · INSTITUTE FOR SYSTEMS BIOLOGY · PI HEATH, JAMES R. · 2021 to 2025
$2.7M
TCR-like antibodies for HPV-induced cancer basic research and theranosticsR01AI121242 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI STRONG, ROLAND K · 2016 to 2019
$1.7M
Identifying relevant HLA-F ligandsR21AI154874 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI STRONG, ROLAND K · 2020 to 2021
$484k
NCI NIH HHS R01 CA264090NIAID NIH HHS R01 AI121242NIAID NIH HHS R21 AI154874
6 · The paper itself

Abstract

CD8 + cytotoxic T cell responses against viral infection represent a major element of the adaptive immune response. We describe the development of a peptide antigen - major histompatibility complex (pMHC) library representing the full SARS-CoV-2 viral proteome, and comprised of 634 pMHC multimers representing the A*02.01, A*24.02, and B*07.02 HLA alleles, as well as specific antigens associated with the cytomegalovirus (CMV). These libraries were used to capture non-expanded CD8 + T cells from blood samples collected from 64 infected individuals, and then analyzed using single cell RNA-seq. The discovery and characterization of antigen-specific CD8

Identifiers

PMID36415462
PMCPMC9681053
OpenAlexW4309359583

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.