Evidence map›Paper›PMID 36414667›Full record

ArticleScientific reports2022

Genome-wide analysis-based single nucleotide polymorphism marker sets to identify diverse genotypes in cabbage cultivars (Brassica oleracea var. capitata).

Jinkwan Jo, Min-Young Kang, Kyung Seok Kim, Hye Rim Youk, Eun-Jo Shim, Hongsup Kim, Jee-Soo Park, Sung-Chur Sim, Byung Cheon Yu, Jin-Kee Jung

Abstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jinkwan JoSeed Testing and Research Center, Korea Seed & Variety Service, Gimcheon, 39660, Republic of Korea.
Min-Young KangSeed Testing and Research Center, Korea Seed & Variety Service, Gimcheon, 39660, Republic of Korea.
Kyung Seok KimDepartment of Pediatrics-Nutrition, Children's Nutrition Research, Baylor College of Medicine, Houston, TX, 77030, USA.
Hye Rim YoukSeed Testing and Research Center, Korea Seed & Variety Service, Gimcheon, 39660, Republic of Korea.
Eun-Jo ShimSeed Testing and Research Center, Korea Seed & Variety Service, Gimcheon, 39660, Republic of Korea.
Hongsup KimSeed Testing and Research Center, Korea Seed & Variety Service, Gimcheon, 39660, Republic of Korea.
Jee-Soo ParkSeed Testing and Research Center, Korea Seed & Variety Service, Gimcheon, 39660, Republic of Korea.
Sung-Chur SimDepartment of Bioresources Engineering, Sejong University, Seoul, 05006, Republic of Korea.
Byung Cheon YuSeed Testing and Research Center, Korea Seed & Variety Service, Gimcheon, 39660, Republic of Korea.
Jin-Kee JungSeed Testing and Research Center, Korea Seed & Variety Service, Gimcheon, 39660, Republic of Korea. jinkeejung@korea.kr.

Funding

Ministry of Agriculture, Food and Rural Affairs 317011-4
6 · The paper itself

Abstract

Plant variety protection is essential for breeders' rights granted by the International Union for the Protection of New Varieties of Plants. Distinctness, uniformity, and stability (DUS) are necessary for new variety registration; to this end, currently, morphological traits are examined, which is time-consuming and laborious. Molecular markers are more effective, accurate, and stable descriptors of DUS. Advancements in next-generation sequencing technology have facilitated genome-wide identification of single nucleotide polymorphisms. Here, we developed a core set of single nucleotide polymorphism markers to identify cabbage varieties and traits of test guidance through clustering using the Fluidigm assay, a high-throughput genotyping system. Core sets of 87, 24, and 10 markers are selected based on a genome-wide association-based approach. All core markers could identify 94 cabbage varieties and determine 17 DUS traits. A genotypes database was validated using the Fluidigm platform for variety identification, population structure analysis, cabbage breeding, and DUS testing for plant cultivar protection.

Indexed as

BrassicaGenome-Wide Association StudyGenotypePlant BreedingPlantsPolymorphism, Single Nucleotide

Identifiers

PMID36414667
PMCPMC9681867

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.