Evidence map›Paper›PMID 36413319›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

Relative Protein Lifetime Measurement in Plants Using Tandem Fluorescent Protein Timers.

Hongtao Zhang, Eric Linster, Markus Wirtz, Frederica L Theodoulou

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Hongtao ZhangPlant Sciences and the Bioeconomy, Rothamsted Research, Harpenden, UK.
Eric LinsterCentre for Organismal Studies, University of Heidelberg, Heidelberg, Germany.
Markus WirtzCentre for Organismal Studies, University of Heidelberg, Heidelberg, Germany.
Frederica L TheodoulouPlant Sciences and the Bioeconomy, Rothamsted Research, Harpenden, UK. freddie.theodoulou@rothamsted.ac.uk.
Heidelberg University · DERothamsted Research · GB

Funding

Biotechnology and Biological Sciences Research Council BBS/E/C/000I0420
6 · The paper itself

Abstract

Targeted protein degradation plays a wide range of important roles in plant growth and development, but analyzing protein turnover in vivo is technically challenging. Until recently, there has been no straightforward methodology for quantifying protein dynamics at subcellular resolution during cellular transitions in plants. A tandem fluorescent protein timer (tFT) is a fusion of two different fluorescent proteins with distinct fluorophore maturation kinetics, which allows estimation of relative protein age from the ratio of fluorescence intensities of the two fluorescent proteins. Here, we describe approaches to use this technology to report relative protein lifetime in both transient and stable plant transformation systems. tFTs enable in vivo, real-time protein lifetime assessment within subcellular compartments and across tissues, permitting the analysis of protein degradation dynamics in response to stresses or developmental cues and in different genetic backgrounds.

Indexed as

ProteinsReceptors, Chimeric AntigenFluorescent DyesKineticsPlantsProteolysisFluorescent DyesProteinsReceptors, Chimeric AntigenConfocal microscopyFluorescent proteinsGFPmCherryProteasomeProtein turnover

Identifiers

PMID36413319
OpenAlexW4309661866

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.