Evidence map›Paper›PMID 36409899›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Intrinsically disordered ectodomain modulates ion permeation through a metal transporter.

Jana Aupič, Fabio Lapenta, Pavel Janoš, Alessandra Magistrato

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Jana AupičNational Research Council of Italy - Materials Foundry Istituto Officina dei Materiali c/o International School for Advanced Studies, 34136 Trieste, Italy.ORCID 0000-0001-6246-962X
Fabio LapentaLaboratory for Environmental and Life Sciences, University of Nova Gorica, 5000 Nova Gorica, Slovenia.ORCID 0000-0003-1195-3758
Pavel JanošNational Research Council of Italy - Materials Foundry Istituto Officina dei Materiali c/o International School for Advanced Studies, 34136 Trieste, Italy.ORCID 0000-0002-9068-2652
Alessandra MagistratoNational Research Council of Italy - Materials Foundry Istituto Officina dei Materiali c/o International School for Advanced Studies, 34136 Trieste, Italy.ORCID 0000-0002-2003-1985
Scuola Internazionale Superiore di Studi Avanzati · ITUniversity of Nova Gorica · SI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The function of many channels and transporters is enriched by the conformational plasticity of intrinsically disordered regions (IDRs). Copper transporter 1 (Ctr1) is the main entry point for Cu(I) ions in eukaryotes and contains IDRs both at its N-terminal (Nterm) and C-terminal ends. The former delivers copper ions from the extracellular matrix to the selectivity filter in the Ctr1 lumen. However, the molecular mechanism of this process remains elusive due to Nterm's disordered nature. Here, we combine advanced molecular dynamics simulations and circular dichroism experiments to show that Cu(I) ions and a lipidic environment drive the insertion of the Nterm into the Ctr1 selectivity filter, causing its opening. Through a lipid-aided conformational switch of one of the transmembrane helices, the conformational change of the selectivity filter propagates down to the cytosolic gate of Ctr1. Taken together, our results elucidate how conformational variability of IDRs modulates ion transport.

Indexed as

CopperMolecular Dynamics SimulationIonsIon TransportCopperIonsfunction regulationintrinsically disordered regionsion channels and transportersmolecular dynamics

Identifiers

PMID36409899
PMCPMC9889885
OpenAlexW4309499235

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.