ArticleGigaScience2022
Making Common Fund data more findable: catalyzing a data ecosystem.
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Article in GigaScience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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17citing papers in PubMed
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Who cites it
17 citing papers in PubMed.
- Training Perspectives from the NIH T32 Artificial Intelligence for Precision Nutrition Programs.The Journal of nutrition · 2026Article
- The Common Fund Data Ecosystem (CFDE).bioRxiv : the preprint server for biology · 2026Article
- Aggregation of gene regulatory information and knowledge on FAIR principles enables discovery of pathogenic gene regulatory variants.Bioinformatics (Oxford, England) · 2026Article
- SEA CDM: Study-Experiment-Assay Common Data Model and Databases for Cross-Domain Data Integration and Analysis.Scientific data · 2026Article
- Making genomic data FAIR through effective Data Portals.Scientific data · 2025Article
- Creating an Interactive Web Interface for Networks Stored in Knowledge Graph Databases.Current protocols · 2025Article
- Balancing ethical data sharing and open science for reproducible research in biomedical data science.Cell reports. Medicine · 2025Article
- Playbook workflow builder: Interactive construction of bioinformatics workflows.PLoS computational biology · 2025Article
- NCI Cancer Research Data Commons: Core Standards and Services.Cancer research · 2024Article
- NCI Cancer Research Data Commons: Lessons Learned and Future State.Cancer research · 2024Review
- The DO-KB Knowledgebase: a 20-year journey developing the disease open science ecosystem.Nucleic acids research · 2024Article
- Navigating bottlenecks and trade-offs in genomic data analysis.Nature reviews. Genetics · 2023Review
- Ten lessons for data sharing with a data commons.Scientific data · 2023Article
- Maximizing the utility of public data.Frontiers in genetics · 2023Article
- Making Common Fund data more findable: catalyzing a data ecosystem.GigaScience · 2022Article
- Getting Started with LINCS Datasets and Tools.Current protocols · 2022Article
- Gene and drug landing page aggregator.Bioinformatics advances · 2022Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
42 authors.
Amanda L CharbonneauPopulation Health and Reproduction, UC Davis, Davis, CA 95616, USA.ORCID 0000-0001-7376-7702
Arthur BradyUniversity of Maryland Institute for Genome Sciences, University of Maryland School of Medicine, MD 21201, USA.ORCID 0000-0002-8809-2477
Karl CzajkowskiUniversity of Southern California Information Sciences Institute, CA 90292, USA.ORCID 0000-0002-9389-0633
Jain AluvathingalUniversity of Maryland Institute for Genome Sciences, University of Maryland School of Medicine, MD 21201, USA.
Saranya CanchiPopulation Health and Reproduction, UC Davis, Davis, CA 95616, USA.ORCID 0000-0002-9404-7162
Robert CarterUniversity of Maryland Institute for Genome Sciences, University of Maryland School of Medicine, MD 21201, USA.ORCID 0000-0003-0937-8141
Kyle ChardDivision of Decision and Information Sciences, University of Chicago and Argonne National Laboratory, Chicago, IL 60637, USA.ORCID 0000-0002-7370-4805
Daniel J B ClarkeDepartment of Pharmacological Sciences, Mount Sinai Center for Bioinformatics, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.ORCID 0000-0003-3471-7416
Jonathan CrabtreeUniversity of Maryland Institute for Genome Sciences, University of Maryland School of Medicine, MD 21201, USA.
Heather H CreasyUniversity of Maryland Institute for Genome Sciences, University of Maryland School of Medicine, MD 21201, USA.ORCID 0000-0002-1369-6882
Mike D'ArcyUniversity of Southern California Information Sciences Institute, CA 90292, USA.ORCID 0000-0003-2280-917X
Victor FelixUniversity of Maryland Institute for Genome Sciences, University of Maryland School of Medicine, MD 21201, USA.
Michelle GiglioUniversity of Maryland Institute for Genome Sciences, University of Maryland School of Medicine, MD 21201, USA.ORCID 0000-0001-7628-5565
Alicia GingrichUC Davis Medical Center, Davis, CA 95616, USA.ORCID 0000-0002-7239-0154
Rayna M HarrisPopulation Health and Reproduction, UC Davis, Davis, CA 95616, USA.ORCID 0000-0002-7943-5650
Theresa K HodgesUniversity of Maryland Institute for Genome Sciences, University of Maryland School of Medicine, MD 21201, USA.
Olukemi IfeonuUniversity of Maryland Institute for Genome Sciences, University of Maryland School of Medicine, MD 21201, USA.
Minji JeonDepartment of Pharmacological Sciences, Mount Sinai Center for Bioinformatics, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.ORCID 0000-0001-5731-6186
Eryk KropiwnickiDepartment of Pharmacological Sciences, Mount Sinai Center for Bioinformatics, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.ORCID 0000-0003-1567-4641
Marisa C W LimPopulation Health and Reproduction, UC Davis, Davis, CA 95616, USA.ORCID 0000-0003-2097-8818
R Lee LimingDivision of Decision and Information Sciences, University of Chicago and Argonne National Laboratory, Chicago, IL 60637, USA.ORCID 0000-0002-4930-6145
Jessica LumianPopulation Health and Reproduction, UC Davis, Davis, CA 95616, USA.
Anup A MahurkarUniversity of Maryland Institute for Genome Sciences, University of Maryland School of Medicine, MD 21201, USA.
Meisha MandalRTI International, Research Triangle Park 27709-2194, USA.ORCID 0000-0001-9356-3475
James B MunroUniversity of Maryland Institute for Genome Sciences, University of Maryland School of Medicine, MD 21201, USA.ORCID 0000-0003-3067-6434
Suvarna NadendlaUniversity of Maryland Institute for Genome Sciences, University of Maryland School of Medicine, MD 21201, USA.ORCID 0000-0003-3643-281X
Rudyard RichterDivision of Decision and Information Sciences, University of Chicago and Argonne National Laboratory, Chicago, IL 60637, USA.
Cia RomanoUniversity of Southern California Information Sciences Institute, CA 90292, USA.ORCID 0000-0002-0106-4730
Philippe Rocca-SerraOxford e-Research Centre, Department of Engineering Science, University of Oxford, Oxford OX1 3QG, UK.ORCID 0000-0001-9853-5668
Michael SchorUniversity of Maryland Institute for Genome Sciences, University of Maryland School of Medicine, MD 21201, USA.
Robert E SchulerUniversity of Southern California Information Sciences Institute, CA 90292, USA.ORCID 0000-0002-8956-5707
Hongsuda TangmunarunkitUniversity of Southern California Information Sciences Institute, CA 90292, USA.ORCID 0000-0002-9502-291X
Alex WaldropRTI International, Research Triangle Park 27709-2194, USA.ORCID 0000-0002-4502-7894
Cris WilliamsUniversity of Southern California Information Sciences Institute, CA 90292, USA.
Karen WordThe Carpentries, Oakland 94607, USA.ORCID 0000-0002-7294-7231
Susanna-Assunta SansoneOxford e-Research Centre, Department of Engineering Science, University of Oxford, Oxford OX1 3QG, UK.ORCID 0000-0001-5306-5690
Avi Ma'ayanDepartment of Pharmacological Sciences, Mount Sinai Center for Bioinformatics, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.ORCID 0000-0002-6904-1017
Rick WagnerUniversity of California San Diego, San Diego, CA 92093, USA.ORCID 0000-0003-1291-5876
Ian FosterDivision of Decision and Information Sciences, University of Chicago and Argonne National Laboratory, Chicago, IL 60637, USA.ORCID 0000-0003-2129-5269
Carl KesselmanUniversity of Southern California Information Sciences Institute, CA 90292, USA.ORCID 0000-0003-0917-1562
C Titus BrownPopulation Health and Reproduction, UC Davis, Davis, CA 95616, USA.ORCID 0000-0001-6001-2677
Owen WhiteUniversity of Maryland Institute for Genome Sciences, University of Maryland School of Medicine, MD 21201, USA.ORCID 0000-0001-7406-7361
Funding
University of Maryland NIH Data Commons Facilitation CenterOT3OD025459 · OD · UNIVERSITY OF MARYLAND BALTIMORE · PI WHITE, OWEN R · 2017 to 2023
$23.5MThe LINCS DCIC Engagement Plan with the CFDEOT2OD030160 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MA'AYAN, AVI · 2020 to 2024
$3.4MBiotechnology and Biological Sciences Research Council BB/E025080/1Biotechnology and Biological Sciences Research Council BB/H024921/1Biotechnology and Biological Sciences Research Council BB/I000771/1Biotechnology and Biological Sciences Research Council BB/L024055/1NIH HHS OT2 OD030160NIH HHS OT3 OD025459
Abstract
The Common Fund Data Ecosystem (CFDE) has created a flexible system of data federation that enables researchers to discover datasets from across the US National Institutes of Health Common Fund without requiring that data owners move, reformat, or rehost those data. This system is centered on a catalog that integrates detailed descriptions of biomedical datasets from individual Common Fund Programs' Data Coordination Centers (DCCs) into a uniform metadata model that can then be indexed and searched from a centralized portal. This Crosscut Metadata Model (C2M2) supports the wide variety of data types and metadata terms used by individual DCCs and can readily describe nearly all forms of biomedical research data. We detail its use to ingest and index data from 11 DCCs.
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LicenceCC BY
Read underepoch 390
Registered trials
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.