Evidence map›Paper›PMID 36409681›Full record

ArticlePloS one2022

Transcriptome analysis reveals the regulatory mode by which NAA promotes the growth of Armillaria gallica.

Jinlong Cai, Bilian Chen, Wenchao Li, Peng Xu, Yongguo Di, Huini Xu, Kunzhi Li

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Biology · 2026
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jinlong CaiFaculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China.
Bilian ChenFaculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China.
Wenchao LiFaculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China.
Peng XuFaculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China.
Yongguo DiPlanting Department of Zhaoyang District Bureau of Agriculture, Zhaotong, China.
Huini XuFaculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China.
Kunzhi LiFaculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, China.ORCID 0000-0003-0764-1110
Kunming University of Science and Technology · CNZhaotong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A symbiotic relationship is observed between Armillaria and the Chinese herbal medicine Gastrodia elata (G. elata). Armillaria is a nutrient source for the growth of G. elata, and its nutrient metabolism efficiency affects the growth and development of G. elata. Auxin has been reported to stimulate Armillaria species, but the molecular mechanism remains unknown. We found that naphthalene acetic acid (NAA) can also promote the growth of A. gallica. Moreover, we identified a total of 2071 differentially expressed genes (DEGs) by analyzing the transcriptome sequencing data of A. gallica at 5 and 10 hour of NAA treatment. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses showed that these unigenes were significantly enriched in the metabolism pathways of arginine, proline, propanoate, phenylalanine and tryptophan. The expression levels of the general amino acid permease (Gap), ammonium transporter (AMT), glutamate dehydrogenase (GDH), glutamine synthetase (GS), Zn(II) 2Cys6 and C2H2 transcription factor genes were upregulated. Our transcriptome analysis showed that the amino acid and nitrogen metabolism pathways in Armillaria were rapidly induced within hours after NAA treatment. These results provide valuable insights into the molecular mechanisms by which NAA promotes the growth of Armillaria species.

Indexed as

ArmillariaGastrodiaGene Expression ProfilingGene OntologyNaphthaleneacetic AcidsNaphthaleneacetic Acids

Identifiers

PMID36409681
PMCPMC9678268
OpenAlexW4309495342

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.