Evidence map›Paper›PMID 36408789›Full record

ArticleBioscience reports2022

Strand 1A variant in neuroserpin shows increased aggregation and no loss of inhibition: implication in ameliorating polymerization to retain activity.

Shoyab Ansari, Shahzaib Ahamad, Abdul Burhan Khan, Sana Fatima, Tahif Ahmad, Yasmeen Khan, Dinesh Gupta, Mohamad Aman Jairajpuri

Open access · goldAbstract read
In one paragraph

Article in Bioscience reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 88% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Shoyab AnsariProtein Conformation and Enzymology Laboratory, Department of Biosciences, Jamia Millia Islamia (A Central University), New Delhi 110025, India.
Shahzaib AhamadTranslational Bioinformatics Group, International Centre for Genetic Engineering and Biotechnology (ICGEB), New Delhi, 110067, India.ORCID 0000-0003-2009-7367
Abdul Burhan KhanProtein Conformation and Enzymology Laboratory, Department of Biosciences, Jamia Millia Islamia (A Central University), New Delhi 110025, India.
Sana FatimaProtein Conformation and Enzymology Laboratory, Department of Biosciences, Jamia Millia Islamia (A Central University), New Delhi 110025, India.
Tahif AhmadProtein Conformation and Enzymology Laboratory, Department of Biosciences, Jamia Millia Islamia (A Central University), New Delhi 110025, India.
Yasmeen KhanCSIR-Institute of Genomics and Integrative Biology, Mathura Road, New Delhi 110025, India.
Dinesh GuptaTranslational Bioinformatics Group, International Centre for Genetic Engineering and Biotechnology (ICGEB), New Delhi, 110067, India.
Mohamad Aman JairajpuriProtein Conformation and Enzymology Laboratory, Department of Biosciences, Jamia Millia Islamia (A Central University), New Delhi 110025, India.ORCID 0000-0001-9888-2213
Jamia Millia Islamia · INInternational Centre for Genetic Engineering and Biotechnology · INInstitute of Genomics and Integrative Biology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neuroserpin (NS) is predominantly expressed in the brain and is the primary inhibitor of tissue plasminogen activator (tPA). NS variants are associated with the neurogenerative disease termed familial encephalopathy with neuroserpin inclusion bodies (FENIB). The disease is characterized by variable age of onset and severity. The reactive center loop (RCL) insertion-based inhibitory mechanism of NS requires a coordinated conformational change leading to a shift in the strands of the β-sheet A and movement of helix F. Strand 1A is connected to the helix F at its C terminal end and with the strand 2A at its N terminal, both these domain move for accommodating the inserting loop; therefore, a variant that influences their movement may alter the inhibition rates. A molecular dynamic simulation analysis of a H138C NS variant from strand 1A showed a large decrease in conformational fluctuations as compared with wild-type NS. H138 was mutated, expressed, purified and a native-PAGE and transmission electron microscopy (TEM) analysis showed that this variant forms large molecular weight aggregates on a slight increase in temperature. However, a circular dichroism analysis showed its secondary structure to be largely conserved. Surprisingly, its tPA inhibition activity and complex formation remain unhindered even after the site-specific labeling of H138C with Alexa fluor C5 maleimide. Further, a helix F-strand 1A (W154C-H138C) double variant still shows appreciable inhibitory activity. Increasingly, it appears that aggregation and not loss of inhibition is the more likely cause of shutter region-based variants phenotypes, indicating that hindering polymer formation using small molecules may retain inhibitory activity in pathological variants of NS.

Indexed as

NeuropeptidesSerpinsNeuroserpinPolymerizationTissue Plasminogen ActivatorNeuropeptidesNeuroserpinSerpinsTissue Plasminogen Activatorepilepsyneuroserpinserpintissue plasminogen activator

Identifiers

PMID36408789
PMCPMC9760604
OpenAlexW4309506892

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.