ArticleFrontiers in microbiology2022
Insights into ecological roles of uncultivated bacteria in Katase hot spring sediment from long-read metagenomics.
Article in Frontiers in microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed.
- Article
- High-resolution metagenome assembly for modern long reads with myloasm.Nature biotechnology · 2026Article
- The prevalence and distribution ofFrontiers in microbiomes · 2026Article
- Cloning and Characterization of the Novel Endoglucanase Identified in Deep Subsurface Thermal Well of Biragzang (North Ossetia) by Metagenomic Analysis.Biomolecules · 2025Article
- Morphological and Molecular Characterization of Cyanobacteria Isolated from Two Geothermal Springs of the Central Ecuadorian Andes.Microorganisms · 2025Article
- Diverse Members of the PhylumInternational journal of molecular sciences · 2025Article
- High-resolution metagenome assembly for modern long reads with myloasm.bioRxiv : the preprint server for biology · 2025Article
- Abundant and active community members respond to diel cycles in hot spring phototrophic mats.The ISME journal · 2025Article
- Plant G × Microbial E: Plant Genotype Interaction with Soil Bacterial Community Shapes Rhizosphere Composition During Invasion.Microbial ecology · 2024Article
- Molecular diversity of green-colored microbial mats from hot springs of northern Japan.Extremophiles : life under extreme conditions · 2024Article
- Integrating multi-platform assembly to recover MAGs from hot spring biofilms: insights into microbial diversity, biofilm formation, and carbohydrate degradation.Environmental microbiome · 2024Article
- Evaluating and improving the representation of bacterial contents in long-read metagenome assemblies.Genome biology · 2024Article
- Uncovering microbiomes of the rice phyllosphere using long-read metagenomic sequencing.Communications biology · 2024Article
- BASALT refines binning from metagenomic data and increases resolution of genome-resolved metagenomic analysis.Nature communications · 2024Article
- Predicted metabolic roles and stress responses provide insights into candidate phyla Hydrogenedentota and Sumerlaeota as members of the rare biosphere in biofilms from various environments.Environmental microbiology reports · 2024Article
- Article
- Multiple approaches of cellular metabolism define the bacterial ancestry of mitochondria.Science advances · 2023Article
- Distribution and diversity of 'Tectomicrobia', a deep-branching uncultivated bacterial lineage harboring rich producers of bioactive metabolites.ISME communications · 2023Article
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5 authors.
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Abstract
Diverse yet-uncultivated bacteria and archaea, i.e., microbial dark matter, are present in terrestrial hot spring environments. Numerous metagenome-assembled genomes (MAGs) of these uncultivated prokaryotes by short-read metagenomics have been reported so far, suggesting their metabolic potential. However, more reliable MAGs, i.e., circularized complete MAGs (cMAGs), have been rarely reported from hot spring environments. Here, we report 61 high-quality (HQ)-MAGs, including 14 cMAGs, of diverse uncultivated bacteria and archaea retrieved from hot spring sediment (52°C, pH 7.2) by highly accurate long-read sequencing using PacBio Sequel II. The HQ MAGs were affiliated with one archaeal and 13 bacterial phyla. Notably, nine of the 14 cMAGs were the first reported cMAGs for the family- to class-level clades that these cMAGs belonged to. The genome information suggests that the bacteria represented by MAGs play a significant role in the biogeochemical cycling of carbon, nitrogen, iron, and sulfur at this site. In particular, the genome analysis of six HQ MAGs including two cMAGs of
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