Evidence map›Paper›PMID 36405497›Full record

ArticleNature cardiovascular research2022

Mitochondrial interactome quantitation reveals structural changes in metabolic machinery in the failing murine heart.

Arianne Caudal, Xiaoting Tang, Juan D Chavez, Andrew Keller, Jared P Mohr, Anna A Bakhtina, Outi Villet, Hongye Chen, Bo Zhou, Matthew A Walker and 2 more

Open access · greenAbstract read
In one paragraph

Article in Nature cardiovascular research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 30 citations in OpenAlex.

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  6. Contemporary insights into elamipretide's mitochondrial mechanism of action and therapeutic effects.Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 2 countries.

Arianne CaudalDepartment of Biochemistry, Department of Anesthesiology & Pain Medicine, University of Washington.
Xiaoting TangDepartment of Genome Sciences, University of Washington, Seattle, WA 98105, USA.
Juan D ChavezDepartment of Genome Sciences, University of Washington, Seattle, WA 98105, USA.
Andrew KellerDepartment of Genome Sciences, University of Washington, Seattle, WA 98105, USA.
Jared P MohrDepartment of Genome Sciences, University of Washington, Seattle, WA 98105, USA.
Anna A BakhtinaDepartment of Genome Sciences, University of Washington, Seattle, WA 98105, USA.
Outi VilletMitochondria and Metabolism Center, Department of Anesthesiology & Pain Medicine, University of Washington.
Hongye ChenMitochondria and Metabolism Center, Department of Anesthesiology & Pain Medicine, University of Washington.
Bo ZhouMitochondria and Metabolism Center, Department of Anesthesiology & Pain Medicine, University of Washington.
Matthew A WalkerMitochondria and Metabolism Center, Department of Anesthesiology & Pain Medicine, University of Washington.
Rong TianDepartment of Biochemistry, Department of Anesthesiology & Pain Medicine, University of Washington.
James E BruceDepartment of Genome Sciences, University of Washington, Seattle, WA 98105, USA.
University of Washington · US

Funding

Diabetes, Obesity and Metabolism Training ProgramT32DK007247 · NIDDK · UNIVERSITY OF WASHINGTON · PI GREGORY J MORTON, KRISTINA Marie UTZSCHNEIDER · 1986 to 2026
$10.0M
NAD+/NADH ratio, protein acetylation and mitochondrial functionR01HL110349 · NHLBI · UNIVERSITY OF WASHINGTON · PI TIAN, RONG · 2011 to 2020
$5.7M
Mechanistic Studies of NAD+/NADH in Human Heart FailureR01HL144937 · NHLBI · UNIVERSITY OF WASHINGTON · PI O'BRIEN, KEVIN D., TIAN, RONG · 2019 to 2023
$4.2M
Quantitation of protein interactions in cancer cellsR01GM086688 · NIGMS · UNIVERSITY OF WASHINGTON · PI BRUCE, JAMES EDWARD · 2009 to 2019
$4.2M
Dynamics of the cellular interactomeR35GM136255 · NIGMS · UNIVERSITY OF WASHINGTON · PI James Edward Bruce · 2020 to 2026
$4.0M
Instrumentation Development: MS Array for Quantitative ProteomicsR01GM097112 · NIGMS · UNIVERSITY OF WASHINGTON · PI BRUCE, JAMES EDWARD · 2011 to 2020
$2.9M
Fatty acid oxidation suppresses cardiac hypertrophyR01HL129510 · NHLBI · UNIVERSITY OF WASHINGTON · PI TIAN, RONG · 2015 to 2018
$2.8M
The heart failure interactomeR01HL144778 · NHLBI · UNIVERSITY OF WASHINGTON · PI BRUCE, JAMES EDWARD · 2019 to 2022
$2.7M
Mitochondrial function and glycolytic switch in pathological cardiac hypertrophyR01HL142628 · NHLBI · UNIVERSITY OF WASHINGTON · PI TIAN, RONG · 2018 to 2021
$2.4M
New Technology for Protein Interaction Network and Topology AnalysisR01RR023334 · NCRR · WASHINGTON STATE UNIVERSITY · PI BRUCE, JAMES EDWARD · 2007 to 2009
$750k
Structure-function changes in the mitochondrial interactome with ageR56AG070096 · NIA · UNIVERSITY OF WASHINGTON · PI BRUCE, JAMES EDWARD, MARCINEK, DAVID J. · 2021 to 2021
$362k
American Heart Association-American Stroke Association 930223NCRR NIH HHS R01 RR023334NHLBI NIH HHS R01 HL110349NHLBI NIH HHS R01 HL129510NHLBI NIH HHS R01 HL142628NHLBI NIH HHS R01 HL144778NHLBI NIH HHS R01 HL144937NIA NIH HHS R56 AG070096NIDDK NIH HHS T32 DK007247NIGMS NIH HHS R01 GM086688NIGMS NIH HHS R01 GM097112NIGMS NIH HHS R35 GM136255
6 · The paper itself

Abstract

Advancements in cross-linking mass spectrometry (XL-MS) bridge the gap between purified systems and native tissue environments, allowing the detection of protein structural interactions in their native state. Here we use isobaric quantitative protein interaction reporter technology (iqPIR) to compare the mitochondria protein interactomes in healthy and hypertrophic murine hearts, 4 weeks post-transaortic constriction. The failing heart interactome includes 588 statistically significant cross-linked peptide pairs altered in the disease condition. We observed an increase in the assembly of ketone oxidation oligomers corresponding to an increase in ketone metabolic utilization; remodeling of NDUA4 interaction in Complex IV, likely contributing to impaired mitochondria respiration; and conformational enrichment of ADP/ATP carrier ADT1, which is non-functional for ADP/ATP translocation but likely possesses non-selective conductivity. Our application of quantitative cross-linking technology in cardiac tissue provides molecular-level insights into the complex mitochondria remodeling in heart failure while bringing forth new hypotheses for pathological mechanisms.

Indexed as

cardiac hypertrophyheart failureinteractomemass spectrometrymitochondriaprotein interactionsquantitative cross-linkingsystems structural biology

Identifiers

PMID36405497
PMCPMC9667921
OpenAlexW4295138518

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.